YRC Public Data Repository - Protein Structure Prediction

Protein:	ORFP:534
Organism:	Saccharomyces paradoxus
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ORFP:534.

Description	E-value	Query Range	Subject Range
MOH1_YEAST - Protein yippee-like MOH1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MOH1 PE=3 SV=1 gi\|190408874 - gi\|190408874\|gb\|EDV12139.1\| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a] ORFP:534 - YBL049W, Contig c449 5976-6392 reverse complement MOH1 - Protein of unknown function, has homology to kinase Snf7p; not required for growth on nonfermentable... gi\|151946346 - gi\|151946346\|gb\|EDN64568.1\| conserved protein [Saccharomyces cerevisiae YJM789]	6.0E-55	[1..138]	[1..138]
YPEL1_CHLAE - Protein yippee-like 1 OS=Chlorocebus aethiops GN=YPEL1 PE=3 SV=1 gi\|10441650 - gi\|10441650\|gb\|AAG17144.1\|AF190625_1 qdgl-1 [Coturnix coturnix] gi\|50756227 - gi\|50756227\|ref\|XP_415068.1\| PREDICTED: hypothetical protein [Gallus gallus] gi\|68359591, gi\|... - gi\|77540170\|gb\|ABA86947.1\| yippee-like 1 [Danio rerio], gi\|68359591\|ref\|XP_701563.1\| PREDICTED: hypo... gi\|50418351, gi\|... - gi\|50418351\|gb\|AAH77489.1\| Ypel1-prov protein [Xenopus laevis], gi\|148234044\|ref\|NP_001086812.1\| yip... YPEL1_COTJA - Protein yippee-like 1 OS=Coturnix coturnix japonica GN=YPEL1 PE=3 SV=1 HGNC:12845\|MIM:6... - 1 (Drosophila) gi\|89268285, gi\|... - gi\|89268285\|emb\|CAJ83274.1\| yippee-like 1 (Drosophila) [Xenopus tropicalis], gi\|62859743\|ref\|NP_0010... gi\|542160491\|ref... - PREDICTED: protein yippee-like 1 [Zonotrichia albicollis] YPEL1 - yippee-like 1 (Drosophila) gi\|90082661 - gi\|90082661\|dbj\|BAE90512.1\| unnamed protein product [Macaca fascicularis] ENSPTRT00000057008 - null gi\|109451302, gi... - gi\|109451880\|emb\|CAK54811.1\| YPEL1 [synthetic construct], gi\|109451302\|emb\|CAK54512.1\| YPEL1 [synthe... ENSCJAT00000030669 - null	4.0E-44	[41..136]	[19..114]
gi\|149019722, gi... - gi\|62658242\|ref\|XP_573329.1\| PREDICTED: similar to mdgl-1 [Rattus norvegicus], gi\|149019722\|gb\|EDL77... YPEL1_MOUSE - Protein yippee-like 1 OS=Mus musculus GN=Ypel1 PE=2 SV=1	6.0E-44	[41..136]	[19..114]
gi\|220945414, gi... - gi\|220955226\|gb\|ACL90156.1\| CG15309-PA [synthetic construct], gi\|220945414\|gb\|ACL85250.1\| CG15309-PA... gi\|195393272, gi... - gi\|195393272\|ref\|XP_002055278.1\| GJ19280 [Drosophila virilis], gi\|194149788\|gb\|EDW65479.1\| GJ19280 [... gi\|195481853, gi... - gi\|195481853\|ref\|XP_002101807.1\| GE15414 [Drosophila yakuba], gi\|194189331\|gb\|EDX02915.1\| GE15414 [D... FBpp0305120, CG1... - This gene is referred to in FlyBase by the symbol Dmel\CG15309 (CG15309, FBgn0030183). It is a prote... gi\|195553818, gi... - gi\|195553818\|ref\|XP_002076764.1\| GD24655 [Drosophila simulans], gi\|194202754\|gb\|EDX16330.1\| GD24655 ... gi\|198149402, gi... - gi\|198467232\|ref\|XP_002134630.1\| GA27919 [Drosophila pseudoobscura pseudoobscura], gi\|198149402\|gb\|E... gi\|190648912, gi... - gi\|194890207\|ref\|XP_001977263.1\| GG18944 [Drosophila erecta], gi\|190648912\|gb\|EDV46190.1\| GG18944 [D... gi\|195049314, gi... - gi\|195049314\|ref\|XP_001992695.1\| GH24074 [Drosophila grimshawi], gi\|193893536\|gb\|EDV92402.1\| GH24074... gi\|193908188, gi... - gi\|195130597\|ref\|XP_002009738.1\| GI15523 [Drosophila mojavensis], gi\|193908188\|gb\|EDW07055.1\| GI1552... gi\|195350624, gi... - gi\|195350624\|ref\|XP_002041839.1\| GM11334 [Drosophila sechellia], gi\|194123644\|gb\|EDW45687.1\| GM11334... gi\|194769358, gi... - gi\|194769358\|ref\|XP_001966771.1\| GF19108 [Drosophila ananassae], gi\|190618292\|gb\|EDV33816.1\| GF19108...	3.0E-43	[41..136]	[14..109]
CE23704 - status:Partially_confirmed UniProt:Q9U3G6 protein_id:CAB54236.1	2.0E-42	[41..136]	[32..127]
YIPL4_ARATH - Protein yippee-like At3g55890 OS=Arabidopsis thaliana GN=At3g55890 PE=2 SV=1	6.0E-42	[37..134]	[8..105]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLRYSIYIE NPLSSPSSSY KSINDPLFHS QHRSQKNVSF ITYGCRHCKT HLSSSFQIIS  60
   61 RDYRGRTGTA YLMNKVVNVV EGKVEQRRML TGDYLVCDIL CHWCKRNVGW KYLQSSNDDQ 120
  121 QYKEGKFILE LKNICKCT

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	77.958607
Match:	PF03226
Description:	Yippee putative zinc-binding protein

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted functions:

Term	Confidence	Notes
binding	1.54216426703276	bayes_pls_golite062009
DNA binding	1.15220114016588	bayes_pls_golite062009
protein binding	0.444545392049845	bayes_pls_golite062009
nucleic acid binding	0.397408203611735	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: