YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42734483, gi\|...
Organism:	Mus musculus
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42734483, gi|....

Description	E-value	Query Range	Subject Range
gi\|109503238, gi... - gi\|209447115\|ref\|NP_001129310.1\| membrane-associated ring finger (C3HC4) 1 [Rattus norvegicus], gi\|1...	278.0	[0..1]	[285..1]
gi\|114630378, gi... - gi\|114630380\|ref\|XP_001159562.1\| PREDICTED: cellular modulator of immune recognition isoform 6 [Pan ...	256.0	[0..1]	[285..3]
MARCH1 - membrane-associated ring finger (C3HC4) 1	252.0	[0..7]	[285..12]
gi\|109076069, gi... - gi\|109076069\|ref\|XP_001099555.1\| PREDICTED: similar to membrane-associated RING-CH protein I isoform...	251.0	[0..7]	[285..12]
MARH8_MOUSE - E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2 SV=1 gi\|157823649, gi... - gi\|157823649\|ref\|NP_001101352.1\| membrane-associated ring finger (C3HC4) 8 [Rattus norvegicus], gi\|1...	251.0	[0..1]	[285..3]
MARH8_BOVIN - E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2 SV=1	251.0	[0..1]	[285..3]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLHQISVIP ARETASNGRS SMGRNKEKNK EVENEKSPGR SASRSSNISK ASSPTTGTAP  60
   61 RSQSRLSVCP STQDICRICH CEGDEESPLI TPCRCTGTLR FVHQSCLHQW IKSSDTRCCE 120
  121 LCKYDFIMET KLK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.69897
Match:	2d8sA
Description:	No description for 2d8sA was found.

Predicted Domain #2

Region A:
Residues: [134-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLRKWEKLQM TTSERRKIFC SVTFHVIAVT CVVWSLYVLI DRTAEEIKQG NDNGVLEWPF  60
   61 WTKLVVVAIG FTGGLVFMYV QCKVYVQLWR RLKAYNRVIF VQNCPDTANK LEKNFPCNVN 120
  121 TEIKDAVVVP VPQTGSNTLP TAEGAPPEVI PV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits