YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33285441
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKTLAFAL SVVMPLWTGH AYADSLVSKA QQEQAVQTAH NAAREQGFNH TEASIKAQRD  60
   61 ALLAKRDQLQ NQTDKLSKSF SQNEEQLAEL EEKLRLETGS LGELFGVVRQ AAKDLNHELD 120
  121 NSVTSLGANH DDNVVTDIVA AKSLPSMAQL TGLWRTMIGQ IQASDEVAKV EIPYVNGTGE 180
  181 LNQVSGFRLG SFGLITDDSY VNWNSGRGNA EAFPIQPENG PTSASFEYLN QTGMMDIVID 240
  241 PSRGEMLAQL ANEPTLMDRL KAGGVVGQII LVLLAIGGGI ALFRGANLIK IRQQISRQLK 300
  301 NPEQPSNNPL GRILSVYNKE QNRSVEALEL RLMETIIDEQ EGLEKGLSML KLLAALAPML 360
  361 GLLGTVTGMI ETFQVITQFG NGDPKVMAGG ISMALVTTVL GLIAAMPLLL AHNVLGTQAE 420
  421 NIRNILEKQG ISLVAEQAEK ACFKPNTQSK VAAA

Type	Start	End	Confidence
Signal Peptide	1	23	0.98
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	263	0.99
Transmembrane Helix	264	286	0.90
Cytoplasmic	287	351	0.97
Transmembrane Helix	352	373	0.88
Non-Cytoplasmic	374	389	0.83
Transmembrane Helix	390	411	0.90
Cytoplasmic	412	454	0.95