YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47522404
Protein type:	Transmembrane
Type Confidence:	0.86
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVMRTLMRW LLPVILLCSF CSVAFWIFIS NNNVIPHPAS RIPQKASNTQ SCKACKDSVI  60
   61 IGKALGNYSN SWKKHEANYK RFRLLLNEKC HAVSKAVVTQ NNTPLGSNVV YDGERRKPLQ 120
  121 VTQALYNILA KEQPFGNATW ESCAVVGNGS VLANSSCGEE INSAQFVIKC NLPPLDDRYE 180
  181 KDVGNKTNLV TANPSILHEK YSGLMERRRP FVESLHSYGQ ALLLLPAFSY GHNTPVSLRA 240
  241 FYTLEDFGRD PLPIFLNPEY LRKLTKFWRE QGLNSVRPST GLIMASLALE ICTNVHLYGF 300
  301 WPFGKHPNDS RPITNHYYDN RESKKNVHSM PSEFEQLLKL HKQGVVHIHL GECQPA

Type	Start	End	Confidence
Cytoplasmic	1	9	0.74
Transmembrane Helix	10	29	0.84
Non-Cytoplasmic	30	356	0.96