YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9621903, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASWWDLRRL FGFQSIRTRF QDLSSRRLGI SAVSGAHFSS INFPLIDKKN EEDFRTREVQ  60
   61 LGSHTVSSHG YAVARTHKHD WLILLLLVLV AIGLYVVHPF HRFVGKDMMT DLRYPLKSNT 120
  121 VPVWSIPIYA VLLPIVIFLV VYIRRRDVYD LHHAVLGLLF SLLITAVITE AIKNGVGRPR 180
  181 PDFFWRCFPD GKDVYDKLGD VICHGEKGVV KEGYKSFPSG HTSWSFSGLG FLSLYLSGKI 240
  241 KAFDRRGHVA KLCIVFLPLL FASLVGISRV DDYWHHWQDV FAGGLLGLTV STFCYLQFFP 300
  301 PPYHSEGWGP YAYFRMLEES RQMTQVPNVP NSGHAQLTEV QAEGEEGQGC HGCMGLSLSR 360
  361 DRNATLNDIE SGRG

Type	Start	End	Confidence
Cytoplasmic	1	80	0.98
Transmembrane Helix	81	101	0.93
Non-Cytoplasmic	102	122	0.90
Transmembrane Helix	123	143	0.94
Cytoplasmic	144	150	0.89
Transmembrane Helix	151	172	0.89
Non-Cytoplasmic	173	219	0.95
Transmembrane Helix	220	238	0.90
Cytoplasmic	239	247	0.83
Transmembrane Helix	248	268	0.92
Non-Cytoplasmic	269	279	0.75
Transmembrane Helix	280	299	0.94
Cytoplasmic	300	374	0.98