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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|1272511
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.69
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPGFIQRKS PKLLITMKPE KLFSGLGTSD GEYGVVNSEN ISIDAMQDNR GECHRRSIEM  60
   61 HANDNLGLVS QRDCTNRPKI TPQECLSETE QICHHGENRT KAGLDVDDAE TGGDHTNESR 120
  121 VDECCAEKVN DTETGLDVDS CCGDAQTGGD HTNESCVDGC CVRDSSVMVE EVTGSCEAVS 180
  181 SKEQLLTSFE VVPSKSEGLQ SIHDIRETTR CNTNSNQHTG KGRLCIESSD STLKKRSCKV 240
  241 SRQKIEVSSK PECCNISCVE RIASRSCEKR TFKGSTNVGI SGSSSTDSLS EKFFSEQYSR 300
  301 MYNRYSSILK NLGCICNYLR TLGKESCCLP KVRFCSGEGA SKKTKYSYRN SSGCLTKKKT 360
  361 HGDKERLSND NGHADFVCSK SCCTKMKDCA VTSTISGHSS SEISRIVSME PIENHLNLEA 420
  421 GSTGTEHIVL SVSGMSCTGC ESKLKKSFGA LKCVHGLKTS LILSQAEFNL DLAQGSVKDV 480
  481 IKHLSKTTEF KYEQISNHGS TIDVVVPYAA KDFINEEWPQ GVTELKIVER NIIRIYFDPK 540
  541 VIGARDLVNE GWSVPVSIAP FSCHPTIEVG RKHLVRVGCT TALSIILTIP ILVMAWAPQL 600
  601 REKISTISAS MVLATIIQFV IAGPFYLNAL KSLIFSRLIE MDLLIVLSTS AAYIFSIVSF 660
  661 GYFVVGRPLS TEQFFETSSL LVTLIMVGRF VSELARHRAV KSISVRSLQA SSAILVDKTG 720
  721 KETEINIRLL QYGDIFKVLP DSRIPTDGTV ISGSSEVDEA LITGESMPVP KKCQSIVVAG 780
  781 SVNGTGTLFV KLSKLPGNNT ISTIATMVDE AKLTKPKIQN IADKIASYFV PTIIGITVVT 840
  841 FCVWIAVGIR VEKQSRSDAV IQAIIYAITV LIVSCPCVIG LAVPIVFVIA SGVAAKRGVI 900
  901 FKSAESIEVA HNTSHVVFDK TGTLTEGKLT VVHETVRGDR HNSQSLLLGL TEGIKHPVSM 960
  961 AIASYLKEKG VSAQNVSNTK AVTGKRVEGT SYSGLKLQGG NCRWLGHNND PDVRKALEQG1020
 1021 YSVFCFSVNG SVTAVYALED SLRADAVCTI NLLRQRGISL HILSGDDDGA VRSMAARLGI1080
 1081 ESSNIRSHAT PAEKSEYIKD IVEGRNCDSS SQSKRPVVVF CGDGTNDAIG LTQATIGVHI1140
 1141 NEGSEVAKLA ADVVMLKPKL NNILTMITVS QKAMFRVKLN FLWSFTYNLF AILLAAGAFV1200
 1201 DFHIPPEYAG LGELVSILPV IFVAILLRYA KI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle