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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|5714366
Protein type: Transmembrane
Type Confidence: 0.98
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNELQASSVP LVDKCSSHAV ILPAAKSPNR VSDSAATTAP NAVLYTSGNM SLSTLSTGSG  60
   61 NPNPNPNAST NPRQEPVPLL SQLKLTNDLK QNSHGSQNNL CNGGLGSNNH ALAPKVANNS 120
  121 GGSPNGQKKG TIALSHLPQR PPVDIEFCDI SYSVTDSHRR GFKTILKSVS GKFRNGEITA 180
  181 IMGPSGAGKS TLMNILAGYK TAQLSGSVLI NSKERNLRRF RKLSCYIMQD DVLIANLTVR 240
  241 EAMMVAANLK LGKNMITYAK VVVVEEILET IGLKESVNTL TCNLSGGQRK RLSIALELVN 300
  301 NPPVMFFDEP TSGLDSSTCF QLISLLRSLA RGGRTIVCTI HQPSARLFEK FDHLYLLAQG 360
  361 QCVYEGRVKG LVPYLSSLGY ECPSYHNPAD YVLEVASGEY GDAVPKLVDA VKSGACKKYA 420
  421 HKDYVLTLAQ KGCNNDIIKG SGSGAENAMA ILTLEDEKPP LEDRQLEPSI PVEDPADVKP 480
  481 PKLETQQSQN SDCSVVNMPT NAVDDSCSFS SSKGTQNAVG GSGSGGPSAV VGCMTSLLDS 540
  541 HESVVTLPNK TGFPTSGWTQ FWILLKRSFR TILRDKMLTH MRLFSHVIVG AIIGMIYYDV 600
  601 GNEASKIMSN AGCIFFVSLF TTFTAMMPTI LTFPTEMSVF VREHLNYWYS LKAFYFAKTI 660
  661 ADMPFQIVFS SVYVLVVYYL TSQPMELERV SMFVLICVLN SLVAQSLGLL IGAGMNIETG 720
  721 VFLGPVTTIP TILFSGFFVN FDTIPGYLQW VTYVSYVRYG FEGAMVAIYG MDRAKMQCNQ 780
  781 MYCHYRVPKK FLEEMSMDNA LFWVDAVALI GIFFALRIIA YFVLRWKLHM IR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle