YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9624461
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	241	0.66
Transmembrane Helix	242	261	0.42
Cytoplasmic	262	441	0.64
Transmembrane Helix	442	465	0.87
Non-Cytoplasmic	466	490	0.69
Transmembrane Helix	491	513	0.55
Cytoplasmic	514	1002	0.62
Transmembrane Helix	1003	1021	0.50
Non-Cytoplasmic	1022	1037	0.83
Transmembrane Helix	1038	1060	0.82
Cytoplasmic	1061	1085	0.88
Transmembrane Helix	1086	1109	0.82
Non-Cytoplasmic	1110	1121	0.86
Transmembrane Helix	1122	1144	0.87
Cytoplasmic	1145	1150	0.81
Transmembrane Helix	1151	1172	0.85
Non-Cytoplasmic	1173	1194	0.82
Transmembrane Helix	1195	1216	0.89
Cytoplasmic	1217	1305	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLPNQGHRCH TMRLLKADSQ RRLRDRALEL GQVTFLGQVK HTNRIHRLQI YTTTSDIQMT  60
   61 LNDFDDTRSA QGYYNDQNDM DGAIPVRDAR ARDRNSILSL GGGLVGRAKN MLGMKSPYSE 120
  121 MDLPLTETGA RSAGVDTVGA DDDGGSSSRL KEKKFSASDF KFGFGRRKID PSTLGPRVIL 180
  181 FNNSPANAAN RYVDNHISTA KYNVFTFVPK FLFEQFSKYA NLFFLFSAAL QQIPNISPTN 240
  241 RYTTIAPLAV VLLVSAIKEL VGDWKRKTSD KSLNYSRAQV LKGSTFEDTK WINVAVGDIV 300
  301 KVESEQPFPA DLVLLASSEP EGLCYIETAN LDGETNLKIK QAIPETADLV SPSQLGRLTG 360
  361 RIKSEQPNSS LYTYEATLTL QAGGGEKELA LNPDQLLLRG ATLRNTPWIH GLVVFTGHET 420
  421 KLMRNATATP IKRTAVERMV NLQILMLVGI LLILSLISSI GHLVVRMKSA DELIYLYIGN 480
  481 VNAAQQFFSD IFTYWVLYSN LVPISLFVTI EIVKYYHAFL INSDLDIYYD KTDTSATCRT 540
  541 SSLVEELGQI EYIFSDKTGT LTCNMMEFKQ CSIGGLQYAE VVSEDRRVVD GDDSEMGMYD 600
  601 FNQLVEHLTS HPTRTAIHHF LCLLATCHTV IPERKAEKPD VIKYQAASPD EGALVEGAVM 660
  661 MGYRFTNRRP KSVIISANGQ EQEFELLAVC EFNSTRKRMS TIFRCPDGKI RIYCKGADTV 720
  721 ILERLHADNP TVDVTLQHLE EYASDGLRTL CLAMREVPEE EFSQWYQIYD KAATTATGNR 780
  781 AEELDKRLEI IEKDFFLLGA TAIEDKLQDG VPDTIHTLQT AGIKVWVLTG DRQETAINIG 840
  841 MSCKLISEDM ALLIVNEESA LATKDNLSKK LQQVQSQAGS PDSETLALII DGKSLTYALE 900
  901 KDMEKIFLDL AVMCKAVICC RVSPLQKALV VKLQRHLKAL LLAIGDGAND VSMIQAAHVG 960
  961 VGISGVEGLQ AARSADVAIA QFRFLRKLLL VHGAWSYQRI SKVILYSFYK NIALYMTQFW1020
 1021 YSFQNSFSGQ VIYESWTLSF YNVFFTVMPP FAMGIFDQFI SARLLDRYPQ LYQLGQKGVF1080
 1081 FKMHSFWSWI GNGFYHSLIA YFLSQAIFLW DLPLANGKLA GHWFWGTALY TAVLATVLGK1140
 1141 AALVTNIWTK YTFIAIPGSM IIRMGFLPVY GFSAPRIGAG FSTEYEGIIP NLFQSLVFWL1200
 1201 MAIVLPVVCL VRDFAWKYIK RMYFPQAYHH VQEIQKYNVQ DYRPRMEQFQ KAIRKVRQVQ1260
 1261 RNRKQRGYAF SQADEGGQMR VVNAYDTTRS RGRYGEMASS RPLDI