YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18147009, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKYVTVLNK NNNLNKLLLN SISKGNTLNS NNGLASTSIS INSSIRSFSS FSSSKVMLDK  60
   61 RSEKPQNPLY HRNSTLYSFT PRDVLIKIEK DFVMPPSYEA KSLSDNFAKF SVLFLRKFSN 120
  121 LFFKEKFLHY AIVLETVAAV PGLVAGMFLH LKTLRNMQSN NWIKILMDEM ENERMHLLSF 180
  181 MELTKPTLLE RGMVAVTQAI YWNLFLVFYV LSPKTAHRFT GYLEEQAVVT YTHMLEDIDS 240
  241 GKVPNYKAPQ IAIEYWGLPE DATLRDLILV IRQDESDHRL VNHEISNKIV LNNNEPIILE 300
  301 NHFHKPTIIN PVGEEEIKEH SQEGIRIEKK INPTSEL

Type	Start	End	Confidence
Cytoplasmic	1	126	0.77
Transmembrane Helix	127	150	0.83
Non-Cytoplasmic	151	337	0.61