YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|290550
Protein type:	Globular with Signal Peptide
Type Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESAVSLSLW QQCLARLQDE LPATEFSMWI RPLQAELSDN TLALYAPNRF VLDWVRDKYL  60
   61 NNINGLLTSF CGADAPQLRF EVGTKPVTQT PQAAVTSNVA APAQVAQTQP QRAAPSTRSG 120
  121 WDNVPAPAEP TYRSNVNVKH TFDNFVEGKS NQLARAAARQ VADNPGGAYN PLFLYGGTGL 180
  181 GKTHLLHAVG NGIMARKPNA KVVYMHSERF VQDMVKALQN NAIEEFKRYY RSVDALLIDD 240
  241 IQFFANKERS QEEFFHTFNX LLEGNQQIIL TSDRYPKEIN GVEDRLKSRF GWGLTVAIEP 300
  301 PELETRVAIL MKKADENDIR LPGEVAFFIA KRLRSNVREL EGALNRVIAN ANFTGRAITI 360
  361 DFVREALRDL LALQEKLVTI DNIQKTVAEY YKIKVADLLS KRRSRSGXGP GQMAMALAKE 420
  421 LTNHSLPEIG DAFGGRDHTT VLHACRKIEQ LREESHDIKE DFSNLIRTLS S

Type	Start	End	Confidence
Signal Peptide	1	15	0.71
N-region	1	6
H-region	7	12
C-region	13	15
Cleavage Site	15	16
Non-Cytoplasmic	16	471	0.99