YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|23478687
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTKQIIYLF VSLFLCHVVY GDKCSTPLKD IKFQNLSLYN LIKSHDDTEG RLSNWVYFFF  60
   61 NRIRDPYNVV TYMKILNINT INVEDQPCFI KAFNIYMIHA HAGKILGLEP PKIGNFDAKE 120
  121 YSYIKDYCKD FLWVAETKSV HKHLNELLLS KNEIDNAKLD LSLIKNLITK ASIDTPAKFI 180
  181 DDPMKYLEEM NLVEDIDDPY MDASKLASRD YKLLAILGLK NHYYNADLTQ PIRKVRDEIE 240
  241 SIIRLWFRKR SKLFPLYKNY LMSDGHAKIS KYDIDCYPSL DDFVQGFFSA IKEKMVKIHI 300
  301 RFLDNFTLAM ENKSYKVNGL KGLRYLKSLF QRKTFPNFVK LNSDYISSEL TFLKESFFDV 360
  361 FDSTLDCYTN QYLNFPGDKY LDTKMHSQS

Type	Start	End	Confidence
Signal Peptide	1	21	0.98
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	389	0.99