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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|40714563
Protein type: Transmembrane
Type Confidence: 0.96
Topology Confidence: 0.89
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLCCGFCCGN MSKRDYKVAT TDGIELEPLG GEKCDKDKDK DKEKQTNGVT FGGESSGGRQ  60
   61 TRTGVAVCSQ RRALLVAGIV LGSLLLTAII IAYAGPQNDC SCGSKTVSGY ETDEENNTQP 120
  121 FNPIATNGEP FPWLEKMLPT SVRPLRYMVT IHPNLTTLDV KGQVTIDLHV EKETNFIVLH 180
  181 IQDLNVTEKA IVTPGPKGYA LKIVKVLEFP PRQQLYIEVK ERLKKKSNYT LNLRWYSKLN 240
  241 PEPEGFYVDQ YESSNGVERL LAATVFRPNG ARRAFPCFDE PHVRAPFRIS VFRDRFHIGL 300
  301 SNSIVHTTED VGFYMGTGLL RDDFIETPPL PADAVAWVVS DFQRESLQPS AAYIPTTPAP 360
  361 PGSGVGGKKS AQLNNYTQLK GKNPPVRNIT ALTHSLNVNL TPRQNLTVVQ PTTTTAWPVN 420
  421 LNGNGKPSNL TSLSQSTGSS IKRAPSYTFY APRDLLIRSS FILHTSRDVL EYLQTWLDIS 480
  481 YPLTKVDFVA LPSLDRNMIS SLGLVTLKTS FLTDPSSITS EQYQFSALRI AEAMVRQFFG 540
  541 GITSRKVLKD VWLWEGLIQY LGIHALAPLQ ETWPLREMYL LKMATAALDI DAIQGWDSIM 600
  601 NGTSHDGNNE EFFVQKTAAI FSMLHTAIGE DRFRGCLGSF LKVNRFRTAE PTDLWTICTK 660
  661 KANGSKNIKD MMTLWTHQPG FPLLTVTKMG NSISISQRPF RPAEFLAIHD DSYDGNNYNK 720
  721 TTLNATDMPS TVATTTQGSK HKVAPHMKWI FPVTYVTDIN NVSETLWMQN VDVTFNVPEN 780
  781 VKWIKVNATQ NGYYRVVYND DNWASLIEEL AANPNRFTSE DRLGMLSDAF TLCHANLLPC 840
  841 EITMNMIQYL PSETHYGPMA LALRHLEKWR RILKYSECFL MLSEFIKMKI STVMEKVGWS 900
  901 DDGDVATRLL RPEVLLASVL WEDIDSITKA KNMLNQYLYY NGTAIPPNLR EVVYTGSILS 960
  961 GEYIYWQHCW ERFVNLQRTS ETFVERMQLL RALGRTKDAW LQNRLLSHVT MLPTEEVVQV1020
 1021 LKAIAGTPTG GAMACRFLQA KCFELEKRLG PGTISFAKVI SAITQYGATK FDYDELKSLV1080
 1081 HRFGRGHGMS VLNMTLSSVA SNVEWVARSQ TSLYKWVEGN LHSHR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle