YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|18762509
Protein type:	Transmembrane
Type Confidence:	0.62
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLRLYQVLL YLIQPLIWLR LLLRSRKAPA YRKRWAERYG FCAGKVVPGG IMLHSVSVGE  60
   61 TLAAIPLVRA LRHRYPALPI TVTTMTPTGS ERVQSAFGKD VHHVYLPYDL PGSMNRFLDQ 120
  121 VNPKLVIIME TELWPNLINA LHQRQIPLVI ANARLSARSA AGYKKIGGFM RDMLRRITLI 180
  181 AAQNQEDGDR FIELGLKRSQ LAVTGSLKFD ISVTPELAAR AVTLRRQWAP RRPVWIATST 240
  241 HEGEETILLE AHRKLLEKHP DLREIFVPSH RERFPPAKEL AQKAGFRYTL RSSGEIPSGS 300
  301 TQVVIGDTMG ELMLLYGIAD LAFVGGSLVE RGGHNPLEAA AHAIPVLMGP HTFNFKDICA 360
  361 KLSQAEGLIT VTDVDSLVKE VETLLTDEDY RRYYGRHAVE VLYQNQGALQ RLLQLLEPHL 420
  421 PPRSH

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.70
Transmembrane Helix	8	23	0.53
Cytoplasmic	24	40	0.54
Transmembrane Helix	41	58	0.47
Non-Cytoplasmic	59	425	0.91