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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|563144
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRRRGTPLG VSWTNCVLLL ATGLLVVLIS VHAKNPRPHR GLPAPAPAPV PASVDQVATE  60
   61 NAHRREPTVD GSVLQRLSGS DRAVDEDEDV DEDEDEGLKH QHLEHRQQFD AYLGTIRRLR 120
  121 RPYRSKYTIE QLMRLHVTPK VSGDIDMDPC KAGGFMGDIA LPEGDSGPVV AHTPIDDEEQ 180
  181 ERQEVEQLLA DSPSPVHDPA SVSGAANSGP TKFNATFQLD LEKLKQEVYH EGLQVEEEGL 240
  241 TDIIRKKTKL PSSGPVNLKA GQSQSQSQSA NEPVKPGSES PSDYAQASSY KNDVLPPSEQ 300
  301 RIHTDKPARL TLAEIGPKSS NKTQSLHRNV DTRKIQSDNK DIEDDSGNNF VAERRPSQIV 360
  361 PTSLPEQRST PAHVYSNAGG NGMQLDDEVD FLHSRGVVRR RHRRGPKQRR SNQHLEHEAK 420
  421 LQRLREELSR PVIEGHHRQS HHQKQAQHRQ HHQSHHRKKQ HRQQQHHRRR GQSTTQYVNH 480
  481 SPPGFNQSQQ AQQQSVPEMD LLKAETSKDE EPLRHRVARA VTAKKERIWD YGVIPYEIDG 540
  541 NFSGIHKALF KLAMRHWENS TCIKFVERDP EIHPNYIVFT VRSCGCCSFV GKRGNGPQAI 600
  601 SIGRNCDKFG IVVHELGHVV GFWHEHTRPD REKHVVIEHN NIMKGQDYNF NMLSPDEVDS 660
  661 LGMAYDYDSI MHYARNTFSK GTYLDTILPI EMKGRKRPEI GQRLRLSQGD IAQANLLYKC 720
  721 PKCGRTFQES SGIFASPSHY TAGALSNETE HCEWRITATY GERVELKLEN MNIFKSNNCE 780
  781 TDYLEIRDGY FEKSPLIGRF CGKVDKEVIR TESSRMLLTY VNTHRIEGFR GFKAEFDVVC 840
  841 GGELSVDDAV GRLESPNYPL DYLPNKECVW KITVPESYQV ALKFQSFEVE NHDSCVYDYV 900
  901 EVRDGPGQDA PLIGVFCGYK PPPNMKSSGN SMYVKFVSDT SVQKAGFSAV FMKEVDECET 960
  961 QNHGCEHECI NTLGGYECSC RIGFELHSDK KHCEDACGGV IEYPNGTITS PSFPEMYPLL1020
 1021 KECIWEIVAP PKHRISLNFT HFDLEGTAHQ QSDCGYDSVT VYSKLGENRL KRIGTFCGSS1080
 1081 IPPTATSESN ALRLEFHSDK SIQRSGFAAV FFTDIDECAV NNGGCQHECR NTIGSYICMC1140
 1141 HNGYSMHENG HDCKEGECKY EISAPFGTIF SPNYPDSYPP NADCVWHFIT TPGHRIKLIF1200
 1201 NEFDVESHQE CTYDNVAVYD GESESSSVLG RFCGDKIPFP ISSTSNQMYM VLKTDKNKQK1260
 1261 NGFTASHSTA CGGYLRATSQ VQQFYSHARF GNQDYDDGMD CEWTIAAPDN SYVQLIFLTF1320
 1321 DIESSENCTF DYVQVFSDID DVYGQYGPMY GQYCGNVLPQ DINSMTHSLL VRFKTDGSVP1380
 1381 MKGFSASYVA VPNSGEYDHS DEDVENSYSS EMVTPFPGSL KSIYIEDTQE ETDEYSDFSG1440
 1441 NQLVFNGQYR GRYSLPNRYY SGKA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle