YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|409159
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAELSAASKE LHAVHQWGIE VIRTVQNFSS PFLNEIMKIF TDASTYGFVV FIVGLYLWCI  60
   61 DYKKGLHLAY AAAFTSGLNG GIKRILKIPR PFTHAPEIML KSIGGFSTPS GHSSISAFIY 120
  121 PAVLFYKPFR ENLSKDSQSA KSQKSGSASG KLKIAAAIIL PLLVGFSRVY LGVHYPTDVL 180
  181 LGWGLGAFIF LSMMFFLPAI EAKLSTLNRT DEGDAKNIKF KKTASIRFTL AAFFSFIPIF 240
  241 ISREKVTEAG AILGLAFGNI RIFENSKYSF DASSGTWVQK LLRFIIGSAL SCIPILIFYL 300
  301 LKIDSSYAQY RLYRFLEFFM IGLIASGLVP IIFCLLKISG RR

Type	Start	End	Confidence
Cytoplasmic	1	38	0.75
Transmembrane Helix	39	60	0.88
Non-Cytoplasmic	61	65	0.67
Transmembrane Helix	66	86	0.62
Cytoplasmic	87	149	0.71
Transmembrane Helix	150	172	0.86
Non-Cytoplasmic	173	178	0.90
Transmembrane Helix	179	200	0.92
Cytoplasmic	201	222	0.92
Transmembrane Helix	223	241	0.86
Non-Cytoplasmic	242	248	0.65
Transmembrane Helix	249	263	0.81
Cytoplasmic	264	280	0.83
Transmembrane Helix	281	301	0.94
Non-Cytoplasmic	302	314	0.81
Transmembrane Helix	315	336	0.90
Cytoplasmic	337	342	0.67