YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10801598
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRQNVRTLA LIVCTFTYLL ESELRQLELR ARYNLSEGGY EELERVVLRL KPHKAGVQWR  60
   61 FAGSFYFAIT VITTIGYGHA APSTDGGKVF CMFYALLGIP LTLVMFQSLG ERINTFVRYL 120
  121 LHRAKRGLGM RHAEVSMANM VLIGFVSCIS TLCIGAAAFS YYERWTFFQA YYYCFITLTT 180
  181 IGFGDYVALQ KDQALQTQPQ YVAFSFVYIL TGLTVIGAFL NLVVLRFMTM NAEDEKRDAE 240
  241 HRALLTHNGQ AGGLGGLSCL SGSLGDGVRP RDPVTCAAAA GGMGVGVGVG GSGFRNVYAE 300
  301 MLHFQSMCSC LWYKSREKLQ YSIPMIIPRD LSTSDTCVEH SHSSPGGGGR YSDTPSHPCL 360
  361 CSGTQRSAIS SVSTGLHSLA TFRGLMKRRS SV

Type	Start	End	Confidence
Cytoplasmic	1	58	0.95
Transmembrane Helix	59	81	0.89
Non-Cytoplasmic	82	89	0.84
Transmembrane Helix	90	110	0.88
Cytoplasmic	111	136	0.83
Transmembrane Helix	137	159	0.93
Non-Cytoplasmic	160	168	0.79
Transmembrane Helix	169	189	0.56
Cytoplasmic	190	200	0.52
Transmembrane Helix	201	225	0.85
Non-Cytoplasmic	226	274	0.51
Transmembrane Helix	275	298	0.79
Cytoplasmic	299	392	0.75