YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7433276, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASWVLSECG LRPLPRIYPK PRTGAATSAS SHIKLRISRT DLSGSAISLS NTNKERNWAL  60
   61 RVSAPLRIQT VGEEESERTN NSGGEFFDPG APPPFKLSDI KAAIPKHCWV KNPWKSMSYV 120
  121 VRDVAIVFGL AAAAAYFNNW VVWPLYWFAQ STMFWALFVL GHDCGHGSFS NNHKLNSVVG 180
  181 HILHSSILVP YHGWRISHRT HHQNHGHVEN DESWHPIPEK IYNSLDLATK KLRFTLPFPL 240
  241 LAYPFYLWSR SPGKKGSHFD PNSDLFVPSE KKDVMTSTLC WTAMAALLVG LSFVMGPFQV 300
  301 LKLYGIPYWG FVMWLDLVTY LHHHGHDDKL PWYRGEEWSY LRGGLTTLDR DYGWINNIHH 360
  361 DIGTHVIHHL FPQIPHYHLV EATEAAKPVL GKYYKEPKKS GPLPFYLLGV LIKSMKQDHY 420
  421 VSDTGDIVYY RTDPQLSGFQ K

Type	Start	End	Confidence
Cytoplasmic	1	118	0.99
Transmembrane Helix	119	137	0.92
Non-Cytoplasmic	138	145	0.64
Transmembrane Helix	146	165	0.71
Cytoplasmic	166	277	0.83
Transmembrane Helix	278	298	0.90
Non-Cytoplasmic	299	304	0.73
Transmembrane Helix	305	324	0.77
Cytoplasmic	325	441	0.86