YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|66773198, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.83
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPSGCPSSL PLCVCLFLAS GFAQAGRLLV VPMDGSHWFT RQMTVEKLLQ RGHEVGVVIP  60
   61 EESWQLGKLV NCTVKTYSIP YTVEDMDREF KHFSYTQWKT PEQSMYSLIT GSVKDFLEIT 120
  121 FSHCRSLFKD KKLVEYLKQS SFDAVFLDPF HVCGLTVAKY LSLPSIIFAK DIFCDNLKEG 180
  181 AQCPSLPSYV PRLFSKSADT MSFKERLWNH LIYFEERAFC SYYLKTAIEI ASEVLQTPVT 240
  241 LTDLYSPVSI WLLRTDFVFN FPRPVMPNMV FVGGINCFQR KPLSKEFEAY VNASGEHGIV 300
  301 VFSLGSMVSE IPEKKAMEIA EALGRIPQTV LWRYTGTRPS NLAKNTILVK WLPQNDLLGH 360
  361 PKARAFITHS GSHGIYEGIC NGVPMVMMPL FGDQMDNAKR METRGAGVTL NVLEMTADDL 420
  421 ENALKTVINN KSYKENIMRL SSLHKDRPIE PLDLAVFWVE YVMRHKGAPH LRPAAHDLTW 480
  481 YQYHSLDVIG FLLAIVLTVV FIVYKSCAYG CRKCFGGKGR VKKSHKSKTH

Type	Start	End	Confidence
Signal Peptide	1	25	0.98
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	487	0.99
Transmembrane Helix	488	508	0.74
Cytoplasmic	509	530	0.79