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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|5817014
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSYKPRSS DEALAEQFSL ARAGSGTKPP ATPTYRQISG AMATLPRHDN NHNHNDNSSR  60
   61 IRSDSTATSR TCVYIGGAPT GGGNGNEQIS VTLDRRQPQR MSWLNMRRAK ANETDLPTVT 120
  121 PSPQTTRSCI STVSSVVDSG GGRTTATSGR ISSSGIVTLS GSNNTLSEIQ GGYHDMDHDA 180
  181 VSKNFSISAS AHNITTASNA KLLPAVEDES NKQTKCSVFR GLVLCLCLNL SYANVVRFPR 240
  241 ELDRYGSAYL VPYVVLLFLV GLPMVLLEIS VGQFLGQGAA HTWRASPIFK GACMISRFAS 300
  301 WLSAIWVSLQ AVLALAYIGM FASNDLPFRE CAGPVKLRLS GYLLTGTSGQ ECLQLTFLTP 360
  361 FWRNPLYFGL LAAGLIGLWI VVMLCTHNAK ILRRSIFVFG LVGLVLLCTL TGWEVRNSFS 420
  421 RHYFPELWGF DSNLLAESNI WFNALMQVLF SVNCGFGALP MITGKFLYKG DAVRTSVVYL 480
  481 CFNLLINAIA VTLFMVQFDL SSNGFQNMEE LKPLTAIYDR VLNGSREGDS HLLQHLVPSL 540
  541 IYALIILSAM VSITVAVYTS TRLVPRRPNY VICLIGLVVA VISFAAPKFL IARVLDSRLV 600
  601 GTMVVTALVF ELIAITWIYG AKNIYTDLEF SIGRPIFRVW MWLWVICPAI LTGILVWWCA 660
  661 DDDQYDLLAE YLPRWAPILF VLAVIVIIAC VQIFRQVEYN FFGMICEASK PAKEWGPADP 720
  721 LARHSWKQWR SVCQDTGRRD FTLRRRGTRD YTHSIKKGQY SSATKYGVQN GGQTQTPMHQ 780
  781 QHWKSSTPGN SSPNYSGSMF GDSAIEEDIS VDEFPGITQQ QYVPFQASDT KQSRYSQRIR 840
  841 QTAQPQTQTQ MRPPRESVEK HREVVYIRRL SDGGTGTGHA TRIEISPSNE SITYGNGKSN 900
  901 NNYSSAMSRN PLGRSTGCLA APASRRRPAC MSSGRPARWS MLTHTSCHLQ RRPVERRITF 960
  961 AGGSSTSIRK SIPRSCEIRG GPGVGNEAFT FKKTCCIQNK RICICNPYCI YGTPNYKLRI1020
 1021 TNHVHTESVS SSCEL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle