YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42569121
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.37
Topology Confidence:	0.37
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEATSNLTP SQRYAASALF AIALNQAQIS QSKPLGIPAT GSTGEPISSD SDPISDEADL  60
   61 WVHEVSGLLR PVLRCLQIDS SAWHGLEEIA ASTQAKDHIG AFIKLLSEDV SDDDDDSSEM 120
  121 VEKETALAKA ADAMDQNIRS SSLSVESKME KHVEFENECR DKYSVPEAQS GAEVKETESH 180
  181 GEGEIRDGGH NLGIVEHEKP VGEVALLSHE RKINVLYELL SACLADKHEE NEICTRRRKG 240
  241 YDARHHVALR LLATWFDFQW IKMEAVETMS ACSAMALQKS SGNKEEESLS PNSEWAKWKR 300
  301 GGIVGAAALT GGTLMAITGG LAAPAIAAGF GALAPTLGTI VPVIGASGFA AAAEAAGTVA 360
  361 GSVAVAASFG AAGAGLTGTK MARRTGDIEE FEFKAIGENH NQGRLAVEIL VAGFVLKEED 420
  421 FVKPWEGLTS NLERYTVQWE SENIIAVSTA IQDWLTSRVA MELMRQGAMR TVLNSLLAAM 480
  481 VWPATILVAA DFIDSRWSIA IDRSDKAGKL LAEALRKGLQ GNRPVTLVGF SLGARVVFKC 540
  541 LQTLAETEKN AEIVERVVLL GAPISIKNEN WRDVRKMVAG RFINVYATND WTLGVAFRAS 600
  601 LLSQGLAGIQ PVCIPGIEDV DVTDMVEGHS SYLWKTQQIL ERLELDNSYP VFRNTL

Type	Start	End	Confidence
Signal Peptide	1	27	0.37
N-region	1	18
H-region	19	24
C-region	25	27
Cleavage Site	27	28
Non-Cytoplasmic	28	300	0.51
Transmembrane Helix	301	323	0.85
Cytoplasmic	324	325	0.42
Transmembrane Helix	326	351	0.59
Non-Cytoplasmic	352	354	0.57
Transmembrane Helix	355	378	0.84
Cytoplasmic	379	470	0.95
Transmembrane Helix	471	493	0.84
Non-Cytoplasmic	494	656	0.92