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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: HSDD2_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPAATETER WCVVTGGRGF AARHLVEMLV RYEMFCVRIA DLAPAIMLDP QEGNGVLDEG  60
   61 LRSGRVQYIS ADLRDKSQVV KAFQGAEVVF HMAAPDSSIN NHQLQYSVNV QGTQNVIDAC 120
  121 VDVGVKRLIY TSSPSVVFDG VHGILNGTES MAYPIKHNDS YSATKAEGEE LIMKANGRNG 180
  181 LLTCCIRPSS IFGPGDRLLV PSLVAAARAG KSKFIIGDGN NLYDFTYVEN VAHAHVCAER 240
  241 ALASGGDVST KAAGQAYFIT NMEPIKFWEF MSQLLDGLGY ERPSIKIPAF IMMPIAHLVE 300
  301 LTYKVLGPYG MTVPQLTPSR VRLLSCSRTF DSTKAKDRLG YAPVVPLQEG IRRTIDSFSH 360
  361 LTAGSQSKRE GPSKASRILG GGKVADTLLW KDLKQTLIAI FILISIYYNF VATGSTVVTA 420
  421 LSKALLVASV FLFLHGILPE KIFGYTVEKI PASQFHLSKD SSHDLSLSVI SSWNTTVKAL 480
  481 RSLCQGNDWS FFFKVVFVLL ALSLAGAISL HSIFVIGLPI AFLAFLVYEK KEQEIDSIVV 540
  541 SFKSFACKHK SDVYEKLFGS KKHD

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle