YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Csat-PB
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLPAPVTY SYSHRTVNAN TLKYISLLTL TLQNAILGLS MRYARTRPGD IFLSSTAVLM  60
   61 AEFAKLITCL FLVFNEEGKD AQKFVRSLHK TIIANPMDTL KVCVPSLVYI VQNNLLYVSA 120
  121 SHLDAATYQV TYQLKILTTA MFAVVILRRK LLNTQWGALL LLVMGIVLVQ LAQTEGPTSG 180
  181 SAGGAAAAAT AASSGGAPEQ NRMLGLWAAL GACFLSGFAG IYFEKILKGA EISVWMRNVQ 240
  241 LSLLSIPFGL LTCFVNDGSR IFDQGFFKGY DLFVWYLVLL QAGGGLIVAV VVKYADNILK 300
  301 GFATSLAIII SCVASIYIFD FNLTLQFSFG AGLVIASIFL YGYDPARSAP KPTMHGPGGD 360
  361 EEKLLPRV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.73
Transmembrane Helix	21	44	0.53
Non-Cytoplasmic	45	50	0.40
Transmembrane Helix	51	74	0.53
Cytoplasmic	75	151	0.71
Transmembrane Helix	152	174	0.86
Non-Cytoplasmic	175	202	0.95
Transmembrane Helix	203	223	0.94
Cytoplasmic	224	233	0.88
Transmembrane Helix	234	255	0.84
Non-Cytoplasmic	256	271	0.86
Transmembrane Helix	272	292	0.95
Cytoplasmic	293	300	0.73
Transmembrane Helix	301	319	0.96
Non-Cytoplasmic	320	324	0.80
Transmembrane Helix	325	343	0.92
Cytoplasmic	344	368	0.92