YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|42571017
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLNISSSPI SHRNPHFLSN FNNPISYFPR RSKTHLSKSH FFPKFTPLSN QSLKNRVLFG  60
   61 NKRYPDGERF DFRSRAISGI DLGSFESVLE AIAVLTTIIV VHESGHFLAA SLQGIHVSKF 120
  121 AIGFGPILAK FDYNNVEYSL RAFPLGGFVG FPDNDPDSEI PIDDENLLKN RPTLDRSIVV 180
  181 SAGIIANVIF AYAIIFVQVL SVGLPVQEAF PGVLVPEVKT FSAASRDGLL SGDVILAVDG 240
  241 TELSKTGPDA VSKIVDIVKR NPKSNVVFRI ERGGEDFDIR VTPDKNFDGT GKIGVQLSPN 300
  301 VRITKTASKV AGPVAIIAVG AEVARSNIDG LYQFAALLNI NLAVINLLPL PALDGGTLAL 360
  361 ILLEAVRGGK KLPVEVEQGI MSSGIMLVIF LGLFLIVKDT LSLDFIKEML

Type	Start	End	Confidence
Cytoplasmic	1	177	0.69
Transmembrane Helix	178	200	0.82
Non-Cytoplasmic	201	341	0.64
Transmembrane Helix	342	363	0.68
Cytoplasmic	364	378	0.48
Transmembrane Helix	379	397	0.91
Non-Cytoplasmic	398	410	0.52