YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|101725
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.32
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFRKSNVYL SLVNSYTIDS PQPSSINYWW NMGSLLGLCL VIQIVTGIFM AMHYSSNIEL  60
   61 AFSSVEHIMR DVHSGYILRY LHANGASFFF MVMFMHMAKG LYYGSYRSPR VTLWNVGVII 120
  121 FILTIATAFL GYCCVYGQMS HWGATVITNL FSAIPFVGND IVSWLWGGFN MEDPYYSNMM 180
  181 LNKSVLCWNI FIWMMNYYII QLIIYNNMIW NKNNMVKMFI MRRKLAVINM YMYMKLIIQR 240
  241 TYSYYMNNTI IYDKNHKLNT DNPIYAYIVG LFEGDGWITI SKKGKYLLYE LGIEMHIRDI 300
  301 QLLYKIKNIL GIGKVSIKKL KMKDGTIKEM CKFNVRNKNH LKNIIIPIFD KYPMLTNKYY 360
  361 DYLYFKDNLL KNIKYYNDLD YYLRPIKPFN TTEDILNKNY FSSWLIGFFE AESYFSIYKP 420
  421 MNKKMKTASF EVSQNNSMEV MLAIKSYLKI TQNIYTDKFN NSRMTTKSIN GIKNVVMFIN 480
  481 NNPIKLLGYK KLQYLLFLKD LRTITKYNNN FKIPNKY

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.52
Transmembrane Helix	32	55	0.87
Cytoplasmic	56	75	0.53
Transmembrane Helix	76	98	0.85
Non-Cytoplasmic	99	110	0.53
Transmembrane Helix	111	136	0.85
Cytoplasmic	137	144	0.45
Transmembrane Helix	145	167	0.84
Non-Cytoplasmic	168	184	0.55
Transmembrane Helix	185	209	0.79
Cytoplasmic	210	224	0.52
Transmembrane Helix	225	239	0.32
Non-Cytoplasmic	240	517	0.62