YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLT2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	92	0.96
Transmembrane Helix	93	112	0.92
Non-Cytoplasmic	113	123	0.78
Transmembrane Helix	124	143	0.95
Cytoplasmic	144	162	0.91
Transmembrane Helix	163	184	0.93
Non-Cytoplasmic	185	190	0.75
Transmembrane Helix	191	209	0.88
Cytoplasmic	210	216	0.66
Transmembrane Helix	217	237	0.90
Non-Cytoplasmic	238	244	0.76
Transmembrane Helix	245	265	0.92
Cytoplasmic	266	283	0.87
Transmembrane Helix	284	306	0.92
Non-Cytoplasmic	307	340	0.84
Transmembrane Helix	341	360	0.68
Cytoplasmic	361	364	0.54
Transmembrane Helix	365	386	0.86
Non-Cytoplasmic	387	398	0.68
Transmembrane Helix	399	419	0.91
Cytoplasmic	420	431	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTVLMATTP PIRCLHASIP TVFRSPAIYQ VSCRSSQLFS YRSTTMMSMC FLRRSDLRSR  60
   61 FLSTPKTTSP MRRPRFSVGA STEESSIPSN RNLIVANSVV IVALAVANRV LYKLALVPMK 120
  121 QYPFFMAQLT TFGYVLIYFT ILYTRRRLGI VTNEMMDVPK WRFAIIGFLE ALGVATGMAA 180
  181 AAMLPGPVIP ILNQTYLVWQ LLFALLILGR RFLLNQIAGC LLVAVGVVVA VSSGSGADTT 240
  241 LSGIGFLWPA VLVASAAFQA GASIIKEFVF NDAAKRLEGK SLDIFVVNSF GSGFQALFVF 300
  301 LLLPFLSNLK GIPFASLPSY LKDGAGCFFN TGAKISGCDG APILPLLYIS TNLAFNISLL 360
  361 HLVKISSAIV SSLTMMLSVP LAVYIMSKPL PYLPGGSSLS SNFTMGCIVL VLGLLLYNIP 420
  421 TTPTKQHTKT S