YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S22A6_RABIT
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.57
Transmembrane Helix	19	37	0.50
Non-Cytoplasmic	38	138	0.86
Transmembrane Helix	139	156	0.95
Cytoplasmic	157	164	0.78
Transmembrane Helix	165	183	0.84
Non-Cytoplasmic	184	190	0.63
Transmembrane Helix	191	211	0.87
Cytoplasmic	212	220	0.79
Transmembrane Helix	221	242	0.90
Non-Cytoplasmic	243	248	0.75
Transmembrane Helix	249	269	0.91
Cytoplasmic	270	334	0.97
Transmembrane Helix	335	357	0.89
Non-Cytoplasmic	358	366	0.82
Transmembrane Helix	367	389	0.79
Cytoplasmic	390	396	0.77
Transmembrane Helix	397	416	0.86
Non-Cytoplasmic	417	426	0.62
Transmembrane Helix	427	446	0.76
Cytoplasmic	447	455	0.59
Transmembrane Helix	456	477	0.60
Non-Cytoplasmic	478	484	0.47
Transmembrane Helix	485	504	0.72
Cytoplasmic	505	551	0.53

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAFNDLLKQV GGVGRFQRIQ VTLVVLPLLL MASHNTLQNF TAAIPPHHCR PPAHANLSKD  60
   61 GGLQAWLPQD TQGRPKSCLR FTSPQERPPF LNGTEANGTG TTEPCTDGWI YDNSTFPSTI 120
  121 VTEWDLVCSH RALRQLGQSL YMAGVLIGAM VFGYLADRLG RRKVLILNYL QTAVSGTCAA 180
  181 FSPNFTVYCT FRLLSGMSLA GIALNCMTLN VEWMPIHTRA YVGTLAGYVY STGQFLLAGV 240
  241 AYAVPHWRYL QLLVSVPFFA FFVYSWFFIE SARWYSTPGR LDLTLKALQK VARINGKQEE 300
  301 GAKLSMEVLR TNLQKELTMS KGQASAMELL RCPALRHLFL CLSLLWFATS FAYYGLVMDL 360
  361 QGFGVSIYLI QVIFGAVDLP AKLVCFLVIN SLGRRPAQMA SLLLAGICIL VNGVIPRDQS 420
  421 IVRTSLAVLG KGCLASSFNC IFLYTGELYP TMIRQTGLGM GSTMARVGSI VSPLVSMTSE 480
  481 LYPSLPLFIY GAVPVAASAA TALLPETLGQ PLPDTVQDLE SRRRGKPRRQ QQEQQKQMVP 540
  541 LQASVQEKNG L