YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|186516803, gi...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEATSNLTP TQRYAAGALF AIALNQAQIN QTQPLGTPAA EDDDGGDEER RSNCSSGDSV  60
   61 SDDPSLWVHE TSGLLRPVFR CLEIDSPAWL GLEQTACSSP AKHHIGAFTR LLSEEANDAS 120
  121 AEMVEQEMAL AKAADAMVHS IQCSVSIDAK KEKHQEYENE CREKYAVPEV KSKDVDLDKE 180
  181 KDKKEAAESA AREGLEAGVV IIDGSHKPEV LENEKSVEEV TLLSHQRKIN VLYELLSACL 240
  241 SDKHHEDKKC KRCRKGYDAR HRVALRLLAT WFNIEWIKVE AIETMVACSA MAIQKSAEMK 300
  301 GEDNLTPTTS WAKWKRGGII GAAAITGGTL MAITGGLAAP AIAAGFGALA PTLGTIIPVI 360
  361 GAGGFAAAAS AAGTVAGSVA VAASFGAAGA GLTGTKMARR IGDLDEFEFK AIGENHNQGR 420
  421 LAVEVLVAGV VFEEEDFVKP WEGLTSNLER YTLQWESKNL ILVSTAIQDW LTSRLAMELM 480
  481 KQGAMHTVLA SLLMALAWPA TILVAADFID SKWSIAIDRS DKAGRLLAEV LQKGLQGNRP 540
  541 ITLVGFSLGA RVIFKCLQAL AETEQNAELV ERVVLLGAPI SINSENWRDV RKMVAGRFIN 600
  601 VYATNDWTLG IAFRASLISQ GLAGIQPICI PGIENVDVTD MVEGHSSYLW KTQQILERLE 660
  661 IDTYYPVFRD TL

Type	Start	End	Confidence
Cytoplasmic	1	317	0.72
Transmembrane Helix	318	344	0.83
Non-Cytoplasmic	345	358	0.53
Transmembrane Helix	359	392	0.77
Cytoplasmic	393	483	0.93
Transmembrane Helix	484	506	0.88
Non-Cytoplasmic	507	672	0.83