YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLT1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	104	0.79
Transmembrane Helix	105	123	0.75
Non-Cytoplasmic	124	134	0.80
Transmembrane Helix	135	155	0.93
Cytoplasmic	156	171	0.86
Transmembrane Helix	172	192	0.93
Non-Cytoplasmic	193	200	0.77
Transmembrane Helix	201	220	0.93
Cytoplasmic	221	227	0.87
Transmembrane Helix	228	249	0.94
Non-Cytoplasmic	250	255	0.83
Transmembrane Helix	256	276	0.92
Cytoplasmic	277	294	0.91
Transmembrane Helix	295	317	0.92
Non-Cytoplasmic	318	348	0.86
Transmembrane Helix	349	370	0.77
Cytoplasmic	371	378	0.70
Transmembrane Helix	379	401	0.86
Non-Cytoplasmic	402	409	0.73
Transmembrane Helix	410	431	0.90
Cytoplasmic	432	447	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTSSDRLI AGLTASIGSI ESRYANPAQS VSLICRNQIN GAPPIVLRSS RRSRLWLIEA  60
   61 IPPAKSWNGS NDGDEDIKKS DTRNYAIGGT GGHAVAGKDD RTMEIVIAAA TTAALGVGNR 120
  121 VLYKLALIPL KQYPFFLAQL STFGYVAVYF SILYFRYRAG IVTKEMLSVP KLPFLIVGVL 180
  181 ESLALAAGMA AASNLSGPST TVLSQTFLVW QILFSIIFLG RRYRINQILG CTLVAFGVIV 240
  241 SVASGSGAAH SFKDTGILWS LLMVFSFLLQ GADTVMKEVI FLDSKKRLKG ASLDLFVVNS 300
  301 YGSIFQVICI ALLLPFLSKL WGIPFNQLPS YIRDGGACFL NIGSRITGCE GAPLLPVMFV 360
  361 MMNMAYNISL LRLIKISSAV VSSLASTVSV PIAVYCFTLP LPYLGVASTL PRGFVAGTII 420
  421 LVVGMLLYAW TPSTNTSDSI IPSPPST