YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DTX52_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.97
Transmembrane Helix	40	61	0.86
Non-Cytoplasmic	62	77	0.72
Transmembrane Helix	78	98	0.89
Cytoplasmic	99	117	0.82
Transmembrane Helix	118	139	0.89
Non-Cytoplasmic	140	154	0.77
Transmembrane Helix	155	174	0.88
Cytoplasmic	175	183	0.77
Transmembrane Helix	184	203	0.85
Non-Cytoplasmic	204	217	0.64
Transmembrane Helix	218	240	0.90
Cytoplasmic	241	257	0.90
Transmembrane Helix	258	279	0.92
Non-Cytoplasmic	280	299	0.88
Transmembrane Helix	300	320	0.90
Cytoplasmic	321	337	0.88
Transmembrane Helix	338	360	0.92
Non-Cytoplasmic	361	373	0.86
Transmembrane Helix	374	394	0.83
Cytoplasmic	395	414	0.74
Transmembrane Helix	415	436	0.91
Non-Cytoplasmic	437	441	0.76
Transmembrane Helix	442	463	0.91
Cytoplasmic	464	508	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METPNIISHT NLLSKIDLEK QNPAPIFPTI TELKSEARSL FSLAFPTILA ALILYARSAI  60
   61 SMLFLGHIGE LELAGGSLAI AFANITGYSV LAGLALGMDP LCSQAFGAGR PKLLSLTLQR 120
  121 TVLFLLTSSV VIVALWLNLG KIMIYLHQDP SISSLAQTYI LCSIPDLLTN SFLHPLRIYL 180
  181 RAQGITSPLT LATLAGTIFH IPMNFFLVSY LGWGFMGVSM AAAASNLLVV IFLVAHVWIA 240
  241 GLHQPTWTRP SSECFKDWGP VVTLAIPSCI GVCLEWWWYE IMTVLCGLLI DPSTPVASMG 300
  301 ILIQTTSLLY IFPSSLGLAV STRVGNELGS NRPNKARLSA IVAVSFAGVM GLTASAFAWG 360
  361 VSDVWGWIFT NDVAIIKLTA AALPILGLCE LGNCPQTVGC GVVRGTARPS MAANINLGAF 420
  421 YLVGTPVAVG LTFWAAYGFC GLWVGLLAAQ ICCAAMMLYV VATTDWEKEA IRARKLTCTE 480
  481 GVDVVITTTQ TNGDLSEPLI YVVTVATD