YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10442731
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKITRDVSI TTENSTSTSG SATASSTSLP ENDHPIFHQP RARIRSGSLF IEGSDSFPSS  60
   61 EVKSYNVYID DSKYSEILKG DTNSSSTDGK QVFEDARDDN FHQESHRDLE DSILDLVRRD 120
  121 PEVAAFPLPP PSSNERNRNS SNGSSAETNL NGHSSSGTIS TSVLLNMGSA EKHAGTTRGD 180
  181 HMESSSMKSF EKLGTRPSSL FYPPPEGTAP YQGPRATVSG NKSTRQTQGT YSFPSMRYGV 240
  241 DLVSPVEGTV DVAKSRVPNN TLNGTFPDKA FIPHEFQIPK KAWNRIPANK STSLKTPKNH 300
  301 SLLIDILKPF EAADLANDQR NSSAVLKNTV HSNGQYNPTN ETSGNRMQDQ RQKNTNEIDL 360
  361 EKIPNPQVPL GIAMDTMRSP NQLHEKEYES NIEAGLASGV GKGDNGIKQH QYKKIPQEID 420
  421 RDQQLSFQME TMPIQRIDSS SIRSFDSRIY DFSEIYSIPR VITTLCICLF VPPLFFFFSV 480
  481 NGNNGVSNYR LMRMIMNYEH RIGLLKGFEW DIDVQWFRTL CFVLGCIEML AIFASIGIGF 540
  541 GVGITRE

Type	Start	End	Confidence
Non-Cytoplasmic	1	460	0.58
Transmembrane Helix	461	483	0.83
Cytoplasmic	484	519	0.50
Transmembrane Helix	520	544	0.86
Non-Cytoplasmic	545	547	0.52