YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YIDC_AZOVD
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIKRSILLV ALAVVSYLLV LQWNQDYGQA ALPPQNAVAQ SASPALPETV PGDSSTSADV  60
   61 PTAGSGNQVP DSAASTAGSD LIQVRTDVLE VAIDPRGGDI VQLKLPKFPR RQDHPEIPFQ 120
  121 LFDNGSERLY LAQSGLTGTN GPDARADGRP LYVSEQRSYQ LADGQDSLVV DLKFSDGGVD 180
  181 YVKRFTFKRG AYDLEVRHQI ANHSEQPWSG NLFAQLKRDA SADPSSTTAT GTATYLGAAL 240
  241 WTSEEPYRKV SMGDMDDKNL RETVQGGWVA WLQHYFVTAW VPNKDDTNLV ATRKDSQGNY 300
  301 IIGFTGSTLN IPAGATGETV TRLYAGPKDQ NQLEALSPGL ELTVDYGFLW FIAQPIFWLL 360
  361 ELIHALLGNW GWSIIVLTVI IKLAFFPLSA ASYRSMGRMR AVAPKLQALK EQHGEDRQKL 420
  421 SQAMMELYKK EKINPLGGCL PILVQMPVFL ALYWVLLESV EMRQAPWLGW ITDLSVKDPY 480
  481 FILPIIMGAT MFFQQTLNPT PPDPMQARVM KLMPIIFTFF FLWFPAGLVL YWVVNNVLSI 540
  541 GQQWYITRQI EKAAQLA

Type	Start	End	Confidence
Signal Peptide	1	30	0.83
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	369	0.89
Transmembrane Helix	370	390	0.87
Cytoplasmic	391	432	0.93
Transmembrane Helix	433	457	0.87
Non-Cytoplasmic	458	477	0.89
Transmembrane Helix	478	497	0.88
Cytoplasmic	498	511	0.86
Transmembrane Helix	512	534	0.90
Non-Cytoplasmic	535	557	0.93