YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|7489170, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQSTAISFSP SISLPSKNRH NLLSLSPSRL PLRFGSANGF STTAPHKLNS VRCSSSSSKL  60
   61 NGSGWISDPL PVPERDSGGV TVRVTSSEPE ISAGEEEPPK SKPLADTLVL GSLFGLWYIF 120
  121 NIYFNIYNKQ VLKTFHYPVT ITLAQLAVGT ILVIFMWTSN LYKRPKISGA QLAAILPLAV 180
  181 VHTLGNLFTN MSLGKVSVSF THTIKAMEPF FSVVLSAMFL GEFPTLWVIS SLVPIVGGVG 240
  241 LASLTEASFN WAGFWSAMAC NLTNQSRNVL SKKFMVRKEE SLDNITLFSI ITIMSFILLA 300
  301 PFAFFMEGVK FTPAYLEASG LNVNQIYTRS LLAALCFHAY QQVSYMILER VSPVTHSVGN 360
  361 CVKRVVVIVT SVLFFRTPVS PINTIGTGVA LAGVFLYSRV KGIKPKPKTA

Type	Start	End	Confidence
Cytoplasmic	1	103	0.83
Transmembrane Helix	104	127	0.78
Non-Cytoplasmic	128	134	0.74
Transmembrane Helix	135	158	0.87
Cytoplasmic	159	166	0.66
Transmembrane Helix	167	189	0.75
Non-Cytoplasmic	190	222	0.51
Transmembrane Helix	223	249	0.69
Cytoplasmic	250	283	0.71
Transmembrane Helix	284	305	0.94
Non-Cytoplasmic	306	378	0.83
Transmembrane Helix	379	400	0.83
Cytoplasmic	401	410	0.91