YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38099365, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.35
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	281	0.68
Transmembrane Helix	282	300	0.35
Cytoplasmic	301	404	0.68
Transmembrane Helix	405	426	0.58
Non-Cytoplasmic	427	443	0.74
Transmembrane Helix	444	466	0.86
Cytoplasmic	467	475	0.64
Transmembrane Helix	476	494	0.89
Non-Cytoplasmic	495	502	0.67
Transmembrane Helix	503	524	0.90
Cytoplasmic	525	531	0.90
Transmembrane Helix	532	556	0.90
Non-Cytoplasmic	557	565	0.87
Transmembrane Helix	566	586	0.93
Cytoplasmic	587	606	0.88
Transmembrane Helix	607	626	0.97
Non-Cytoplasmic	627	636	0.77
Transmembrane Helix	637	657	0.92
Cytoplasmic	658	672	0.90
Transmembrane Helix	673	693	0.90
Non-Cytoplasmic	694	712	0.83
Transmembrane Helix	713	734	0.89
Cytoplasmic	735	743	0.74
Transmembrane Helix	744	763	0.95
Non-Cytoplasmic	764	773	0.83
Transmembrane Helix	774	796	0.89
Cytoplasmic	797	812	0.78
Transmembrane Helix	813	835	0.85
Non-Cytoplasmic	836	866	0.91
Transmembrane Helix	867	889	0.88
Cytoplasmic	890	900	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLEVIGGIT IREFRARAFA EIVFCAISSD QQVKGYGAHI MAHLKDYVRA TSPVMHFLTY  60
   61 ADNYATGYFQ KQGFTKEISL DKSIWMGYIK DYEGGTLMQC SMLPRIRYLE VGRMLLKQKE 120
  121 TVMAKIRLLS KSHLVHQPPE QWASAGNVTP IDPLSVPAIR ATGWSPDMDE LSREPRHGPH 180
  181 FNELRRFLYQ LQNHQQAWPF LKPVNKDEIP DYYKVITSPM DLSTIEERLE QDLYATPKDL 240
  241 VEDVKLIVSN CRQYNNPTTI YHKCANKLEK YMWTLIKEVP ECLGALLVTV AYLGSRRLAL 300
  301 RGISFRARLR ASRVKRFTGT PRIRLSNQKD WTTLNMSSTA TETTKVHALA VVTDASPGKG 360
  361 LNPIADDSSG LMVTIGKKSV GRIDDSDCVD GARPGRGNGK SLLRICLAIG QPSLVNFAVS 420
  421 FTNGIITVGL PAISRSINLP RELFLWPHSV YGLTSGAALL LAGSIADLVG AKSVELVGVS 480
  481 IMATFALASG LAQTGQQLVA FRALMGIGMA MHLPSSVSLV AAAVPRGRAR NVGFACLGLS 540
  541 TTFGFSLGLI LAGVLLQSSD EGWRKAFFAS GSLTAVAAMG GYWVLPTVEA AATGDNIWLK 600
  601 LKAEVDWVGL GLSSAGLSLF SYVLAMLSAD LSAIRNGTTA TLLALSLMLL VSFPFWMSYR 660
  661 TRHGKAALIP NSLWRNIPFA SICLLVTLSW GALNSIELFS SLYFQELQHH SSLTTSLLLL 720
  721 PMILAGSLVN FSTGVFVDRL PARWLVAMSS MLTAGSPLIM ALVDPNLGYW YLQFWAQVLA 780
  781 PLSADVLFTI GLIVVSESFP EQTQALAGAV FNTVAQLGLS LGMGVCQVVA LGVSATGGGV 840
  841 RHGGSGSQDA VAPTDVASLL RGYRASFWAI FGYMLLCTAV AVVGLRNVGR VGVKVGVNRD 900
  901