YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86196181, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.92
Transmembrane Helix	15	36	0.94
Cytoplasmic	37	54	0.93
Transmembrane Helix	55	75	0.90
Non-Cytoplasmic	76	90	0.83
Transmembrane Helix	91	111	0.92
Cytoplasmic	112	131	0.92
Transmembrane Helix	132	154	0.92
Non-Cytoplasmic	155	165	0.74
Transmembrane Helix	166	186	0.92
Cytoplasmic	187	195	0.79
Transmembrane Helix	196	216	0.93
Non-Cytoplasmic	217	254	0.98
Transmembrane Helix	255	277	0.86
Cytoplasmic	278	291	0.76
Transmembrane Helix	292	316	0.79
Non-Cytoplasmic	317	352	0.82
Transmembrane Helix	353	376	0.72
Cytoplasmic	377	398	0.84
Transmembrane Helix	399	422	0.89
Non-Cytoplasmic	423	428	0.74
Transmembrane Helix	429	450	0.92
Cytoplasmic	451	456	0.83
Transmembrane Helix	457	478	0.91
Non-Cytoplasmic	479	500	0.89
Transmembrane Helix	501	520	0.95
Cytoplasmic	521	576	0.96
Transmembrane Helix	577	595	0.92
Non-Cytoplasmic	596	607	0.72
Transmembrane Helix	608	630	0.90
Cytoplasmic	631	687	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTHVPAALD QGTGYGIVLG LGALFAFGMI FVTFVLKRYN AERQTSEMFN TAGRTVKSGL  60
   61 VGSAVVSSWT WAATLLQSTG VCYRYGVSGP FWYASGATVQ IILFATLAIE LKRRAPNAHT 120
  121 FLEVIKARFG TAAHITFMVF GLVTNILVSL MLIVGGSATV NALTGMHTIA AIYLLPVGVV 180
  181 AYTMVGGLKA TILTDWVHTF ILLVIIIIFA LTTYATSEDL GSPSAVYDLL VEAASRHPVE 240
  241 GNKDGSYLTM QSKEGAIFFV INIVGNFGTV FLDNGYYNKA IAASPVHALP GYILGGLSWF 300
  301 AIPWLTATTM GLAAIALESN PRFPTFPNRM SDDEVSEGLV LPYAAVALMG KGGAVATLLI 360
  361 TFMAVTSATS SELIAVSSIF TYDFYRTYFN PSASGKRLIW MSHCIVVGYA AFIATFSVGL 420
  421 WYAGISMGYL YVMMGVIISA AVLPAALTLT WSGLNKWAAT LSPICGLVAA LAAWLATAKR 480
  481 ECGVLDVKCT GSNNPMLAGN VVALLSPVVL IPIFTVIFGL DKYDWVSMMN IRQADDHDIT 540
  541 DAAGVDVEVA PAEEAETQAN FEEEQRKLVR AGKISKTMTV LMTVAFLVLW PMPMYGTGYI 600
  601 FSKPFFTGWV TIGIIWIFCS LGAVGLFPIY EGRKTLVNTF KFMISDLGGK PRLKRLDAQQ 660
  661 VGSPSGGSTP AEKAQDSKDG AVQVTPA