YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38101985, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	37	0.98
Transmembrane Helix	38	60	0.93
Cytoplasmic	61	67	0.88
Transmembrane Helix	68	88	0.94
Non-Cytoplasmic	89	129	0.95
Transmembrane Helix	130	150	0.90
Cytoplasmic	151	157	0.81
Transmembrane Helix	158	178	0.92
Non-Cytoplasmic	179	192	0.88
Transmembrane Helix	193	213	0.93
Cytoplasmic	214	226	0.85
Transmembrane Helix	227	246	0.90
Non-Cytoplasmic	247	258	0.72
Transmembrane Helix	259	279	0.93
Cytoplasmic	280	287	0.86
Transmembrane Helix	288	306	0.95
Non-Cytoplasmic	307	312	0.67
Transmembrane Helix	313	335	0.86
Cytoplasmic	336	347	0.86
Transmembrane Helix	348	369	0.91
Non-Cytoplasmic	370	389	0.96
Transmembrane Helix	390	414	0.90
Cytoplasmic	415	520	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYSWIGAPA EFNGTNAETG GNSATENLNQ WYQSGDQAFI LVSSCLVLIM IPGIAFLYSG  60
   61 LARRKSALSL IWVVMMSFSV VIFQWYFWGY SLAFSTSTTN GFIGDLSKFG LMNTLGKPSQ 120
  121 GSPLIPELLY SFYQMQFCGV TAALVIGATA ERGRVVPAMV FTFFWATIVY CPLAHWVWNA 180
  181 NGWAFKYGVL DYAGGGPVEI GSGMSALAYS WVLGRRNEKM MLNFRPHNIS LITLGTILLW 240
  241 FGWLGFNGGS AFGANLRAAM ACWNTCLTAM FAAMTWTLLD FRLAKKWSLV GWCSGTISGL 300
  301 VAATPASGFI PPWASIVLGV VTGVCCNFGT KVKFLLRIDD SLDVFAEHYI GGVVGLFFNG 360
  361 FFAADYIIGL DGVNTGLVTG GFLNQNYKQL YIQIAFIVAA SAYSFVVSAI LAKIIDMIPG 420
  421 LKLRADEKAE LLGMDDDQHG EFAYDYVEVR RDYLAWTPAE RDPKEDGHAV VPQLGIEGHQ 480
  481 TIHDNIINGV GSVRHTPAVP NDAHAQHDSE KPKSVDRSSE