YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38102101, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	17	0.82
Transmembrane Helix	18	39	0.88
Non-Cytoplasmic	40	114	0.74
Transmembrane Helix	115	140	0.81
Cytoplasmic	141	147	0.66
Transmembrane Helix	148	169	0.77
Non-Cytoplasmic	170	214	0.50
Transmembrane Helix	215	234	0.46
Cytoplasmic	235	247	0.79
Transmembrane Helix	248	272	0.81
Non-Cytoplasmic	273	311	0.84
Transmembrane Helix	312	335	0.86
Cytoplasmic	336	367	0.76
Transmembrane Helix	368	385	0.52
Non-Cytoplasmic	386	386	0.20
Transmembrane Helix	387	402	0.47
Cytoplasmic	403	413	0.66
Transmembrane Helix	414	434	0.88
Non-Cytoplasmic	435	441	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIATIAGPSP LWTIVRLFAL WKGMLVLVAA GSALVGPAYD TSASLLLAPA SNSSSSMFLA  60
   61 RLSSWDAVYF VQQAQRGYVF EQEWAFGEGL PRIITRALRG LNSVGLLRDG GLEAIAVVGV 120
  121 MVAHVSHLLS SLALFWLGAL VLGDQRQALV AACLHVLSPA GLFLSAPYAE AGFSYLSFFG 180
  181 LYLFAVSQSP DAAAYGGGLK KDGAVIVSGF LLGRATTFRT NGLLNGVPFA YAFCRDCLRF 240
  241 LSAPSLAGLR RVVVLGVAGL CIAAGSVWPQ AVAYTRYCGD SLAEGLSRPE WCSQTIPSIY 300
  301 SFVQRRYWGT GLFQYWTISN APLFLLAAPM LYILTRSGWE MATASSGESA EGVKITAKGD 360
  361 MADLVKSLAA AQIILAVTAL TSYHVQIITR LSSGYAVWYW WLAQRLAGDK KAGGFGKGVV 420
  421 TFMIMYAGIQ AVLFSSFLPP A