YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|13328, gi\|1094719
Protein type:	Transmembrane
Type Confidence:	0.88
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVLEWLFLT IAPCDAAEPW QLGSQDAATP IMQGITDLHH DVFFFVILIL VFVSWILGRA  60
   61 LWHFHYKKNP IPQRIVHGTT IEILRTIFPS IIPMFIAIPS FALLYSMDEV VVDPAITIKA 120
  121 IGHQWYRTYE YSDYNSSDEQ SLTFDSYTIP EDDPELGQSR LLEVDNRVVV PAKSYIRFIV 180
  181 TSADVPDSWA VPSLGVKCDA VPGRLNQTSI SVQREGVYYG QCSEICGTNH AFMPIVVEAV 240
  241 PRKDYGSRVS NQLIPQTADS SPIFIGSPNP KKTLFFWGDP SRGYGEQSLT LAWLWAREEK 300
  301 RKPTLT

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.79
Transmembrane Helix	42	62	0.95
Cytoplasmic	63	82	0.80
Transmembrane Helix	83	105	0.83
Non-Cytoplasmic	106	306	0.87