YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38104104, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFAANRISGA IARTSKPQTT RLMSTIRAPA RIQSSIISST RQPVAKHGLL MNSARGSINS  60
   61 VIARNAMQSR GVVAETAAAA MIAAAKAQGA GLATIGLAGA GVGIGTVFGA LIQGVARNPA 120
  121 LRGQLFSYAI LGFAFSEATG LFALMVAFLL MNSPGETFGR SRLQGSTSRY DSASLITPVT 180
  181 GIRQTARPYS VSRNIIRMNI WAAARFLGNP GASVGVYCCQ PLLTENKNVR SLPVLVEFAL 240
  241 VSTPLLKHST NMQETSDCIN IDPALPIYNY ACGYEILDIF RSCLILPGGP DYRAQTLADI 300
  301 TECRASGGGN PDEEELAQWR NWAAFLARLA VRDVESLCYG IWIIRKALEG GVRSENQNTP 360
  361 IVKGDSLHTR LCGVRDWLNI AGPRILQLLL VSAGNGTAVD DMAARTCEPG RLCGDAVPAF 420
  421 GVERWSFWKQ RLGEMSGPSL PSWSWMRKIR FRCAMRCSRL WGGSNRRQGL FKETSRHKEE 480
  481 L

Type	Start	End	Confidence
Cytoplasmic	1	70	0.91
Transmembrane Helix	71	85	0.55
Non-Cytoplasmic	86	90	0.39
Transmembrane Helix	91	115	0.85
Cytoplasmic	116	125	0.56
Transmembrane Helix	126	151	0.87
Non-Cytoplasmic	152	481	0.74