YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39942898, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.60
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	24	0.60
N-region	1	15
H-region	16	21
C-region	22	24
Cleavage Site	24	25
Non-Cytoplasmic	25	58	0.96
Transmembrane Helix	59	81	0.92
Cytoplasmic	82	89	0.80
Transmembrane Helix	90	110	0.93
Non-Cytoplasmic	111	125	0.89
Transmembrane Helix	126	145	0.94
Cytoplasmic	146	256	0.98
Transmembrane Helix	257	281	0.69
Non-Cytoplasmic	282	288	0.62
Transmembrane Helix	289	309	0.90
Cytoplasmic	310	318	0.74
Transmembrane Helix	319	341	0.84
Non-Cytoplasmic	342	399	0.70
Transmembrane Helix	400	417	0.90
Cytoplasmic	418	451	0.81
Transmembrane Helix	452	472	0.87
Non-Cytoplasmic	473	488	0.73
Transmembrane Helix	489	506	0.80
Cytoplasmic	507	520	0.80
Transmembrane Helix	521	539	0.93
Non-Cytoplasmic	540	555	0.85
Transmembrane Helix	556	576	0.93
Cytoplasmic	577	596	0.89

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRRLQAALV GAVVLGSLPS SILAHGGESM NMDHGQAMVK AAQDSDMETY FSYPEYQSAL  60
   61 YAHIALMIVS WVFMLPVAVM FSLARSRYTF PAQTVFVVTN LTGLILGMIF NENTPDLYPN 120
  121 NAHHKLGWAV TALSCAQVAL GVLVRRSEIF GLSLRTRSAR YTPVSTAAMA EHQRASAAPG 180
  181 SAQPHRFSFD SGQGTEPNTA SLCSRPRSSS FISQHDEEAA RKEEAMLLGG NEFYAHDQED 240
  241 DLDFGPGRRP STRNGAVYRV LALAGKAAGI FSNQVLSIFA LGYNIVDRVI LFLGFVAICT 300
  301 GVVTQGRFFE GQEIFSGLAH WIKGAVFFWL GILTLGRWTG AFAEIGWAWN LRPAAATAPW 360
  361 RPSAEFVESA LIFIYGSTNI FLEHLGGGAD SAWSAQDLEH VAITVLFIGG GLCGMLVESA 420
  421 TVRELLNTAV ADHDEADDHL STASPLKRQG SVSLNPIPAL VILLLGIMMS SHTQTEMVSG 480
  481 MVHKQWGDLL KGAAVARGLS YVLMYLKPPR SVLPSRPPTE LLAAFGLMAG GVIFMASSHD 540
  541 TVQGMINQGL DTMFMYTVTM GLVAFLMAWV VIVMALKGWA VRREARWQVV DRSHIA