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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39939840, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDYSYDET GHLWPFFVFT LTTIVTLPLT YALVNRSRDP AAKFPRIKTE YKPKHGDLVQ  60
   61 SQKSAYKRKN RTLGLTLFVL GGWAVMGYML YLISVTEAPV NKLWNPYDIL GLSETASEKV 120
  121 IKKTYKELSR RLHPDKVKPD PAKNETIESL NDKYVEISKA YQALTDEDVR NNYIQFGHPD 180
  181 GKQGFSINIA LPKVIVSDGN GKYVVLVYFM LFGVLLPYWV GSWWYGTQKR SKEGPLMESA 240
  241 NRLFREYEDD IDEGGVISAL SSGREFEDVF KGNKADSGLS KIESRILAAG ETSQFAAGMS 300
  301 LKEKEKLDDL DNGVRRKVLD LLWAYLGRIE LDDAELTKAK FEVAPIAHSL TKSFTAIALA 360
  361 YGNTAPILAS YYASQILIQA IPPKASPLLQ LPHFTPSLAK AIEGDSRVRM SLQRFMDQPD 420
  421 SQRRSQAIGD GLLTEAQYKE AVEVAKQLPF LRVAKAYFKV TGEKYIIPSS LVTLVVKGRF 480
  481 VPPGSENVPE IVGTDLEDVD PAEDDLDAIL GRKKKQVGKD ERGKPVYGAD DETPVVPPLA 540
  541 YAPYFARDHS PRWNVFLTDS KQGKMAVPPF TFAQFDKPIF KDDGKTPTYE MQTLKAQFQA 600
  601 PPQAGHYTFV MHVVCDSYVG FDTKMEVTLV VDEASRAAEM TDEEEISEPD EDSIAGIMSA 660
  661 AKGGAPPPRK KKQAVEEDES DDESGTEEEA DDTSDTNTDT EDES

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle