YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38106763, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADTLDSIVK GAPLPGRESA GKSASGTSPI SSSTTSKAGD PLSHTPSSPS MIYLNLLVLE  60
   61 ASLRAQYLEL RARRRHHSFF LTLLTLWTCG FGYALFFAPR EDGRGVGGSV YWMVDMAERV 120
  121 CFTGGLITVC LVWATGIWDR GVRWPRRWFA ISNRGLRGFN CKIVIQKQPW WAETLATTGW 180
  181 FLTYGLFSNT GSSYRYVDPQ VLREVDAQLN LSAQGHPALP VVSEDEERGA HEEDLAPGGD 240
  241 YLKLLLFAKP FSPTFRENWE LFRTEYWERE NERRALIRVK VKEHDKKLRM QRGGWLWWLP 300
  301 RYKVRPEQQL AAAQQLQQHT AEKPHGHSRH ASTHLSVERE HRRTRSSSVR RGSFSSNATS 360
  361 RSATPTIEVD EACGVTRRAS TASNASDKRR KKLSAAAAGP RSQKRTTESR SVTPEVTSPL 420
  421 AKKATSASDA MENDGNSGAD AVSGEDQTER RTRKKSLSRS PAPSVSSME

Type	Start	End	Confidence
Cytoplasmic	1	77	0.89
Transmembrane Helix	78	98	0.94
Non-Cytoplasmic	99	118	0.91
Transmembrane Helix	119	138	0.95
Cytoplasmic	139	469	0.60