YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|11276057
Protein type:	Globular with Signal Peptide
Type Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNLIRGDKT VKKFVKKAWP FAVVASLAVT SVATWNFTRS SEVNADENGS NAKIKNVIVL  60
   61 IGDGMGPSYM TAHRYMKDNP KTFEMESTEF DKHLVGTQKT YPEDEHENIT DSASAATAMS 120
  121 AGIKTYNAAI AVDNDKAEVK TVLEQAKEKG KSTGLVATSE ITHATPAAFG AHDISRKNMD 180
  181 AIANDYFDEK IKGKHKVDVM LGGGVKNFVR KDRNLTEEFK KSGYSYVTDR DQLLNDKNDQ 240
  241 ILGLFAPGGL DKMIDRNEKT PSLEEMTNAA IERLNKNKNG FFLMVEGSQI DWAGHDNDIV 300
  301 GAMSEMEDFE KAFKAAIEFA KKDKNTLVVA TADHATGGLS LGANGEYNFK VEPIKAAKRT 360
  361 PDFMANEIAK GANVEETLKK YIDLQLTPEE IQAVNDIAPS KDVTKIDNAI EDIFNKRSVT 420
  421 GWTTGGHTGE DVNVYAFGPG KYLFSGVQEN TNIAKRVFDI VGGGDPNKGR R

Type	Start	End	Confidence
Signal Peptide	1	33	0.75
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	471	0.99