YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38110083, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPICIECRHP VKTLWTKYSG TGDGDKVSGH NIRLTVCKNC GRFCDKYVEH DFVVLFVDLV  60
   61 LIKPQVYRHL LHNSLMRDGD RFDPTMIRLG ILLLLFDVYL TWARIEKQFN TSSSADQSSF 120
  121 SRIAQQPIVL QYMFFSFHLS IRLLTSSPWS PLVLLGLLPA PFERPNSVST ALLVSSSTKL 180
  181 FPILMVIWNY DVPAAARSLG WAVVANNVEA LMILLDCGYG AAALLTTAGA LSRWAISSAF 240
  241 LTAAGLEGVS VAAETSIAED GRALWAFLLT ANEWAGRLAT G

Type	Start	End	Confidence
Cytoplasmic	1	84	0.91
Transmembrane Helix	85	103	0.77
Non-Cytoplasmic	104	137	0.71
Transmembrane Helix	138	158	0.77
Cytoplasmic	159	167	0.63
Transmembrane Helix	168	190	0.74
Non-Cytoplasmic	191	209	0.66
Transmembrane Helix	210	231	0.79
Cytoplasmic	232	281	0.63