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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|39952253, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLKTLYGS DSVSRPELNE NFGVDYVVDY HIPPSEAERA EAEAIFIQLV KALAAVGFAT  60
   61 EVRHGGKSSL LIFLKITSDK LLHAQVYRHR LQDWLYGVRA SAPNKQDLTN HFEEEPVSEA 120
  121 ERLRLAYMLI CKPKNEGGAG ITPRSGQWKH VASVFPLHDH RFNRDWIKRW STKYILDDAD 180
  181 LNEIRDKFGE NVAFYFAFLQ SYFKFLVFPA AFGFAAWLVL GKFSWVYALV NCLWSVVFFE 240
  241 YWKKKEVDLA VQWGVRGVSK IQQPRPQFQH ESEAQDPVTG EIIKVFPPLK RLSRQLLQIP 300
  301 FAIACMGVLG SLIFSCFAIE IFITEVYNGP FKQYLTFLPT VLLTIFMPAL TALLTSLADK 360
  361 LTALENYETE AAHHASFVQK MFVINFITAY MPLFLTAFVY IPFGKVLAPH LDVFQVTARK 420
  421 LTKEGKGIKT KEFHVNPDRF SKQMFYFTVT AQIVNLLLEV FVPYFKRKVF KAVEKVQDGI 480
  481 HHSGTVHHQD SPEEAAFLGR VRDEAMLEVY DVTTDYREMV VQFGYLSLFS VAFPLTACSF 540
  541 LINNWVEARS DAMKIAIGSQ RPIPWRNDTI GPWLTSLGFL SWLGSLTSAA VVYLFSSGND 600
  601 RQGPDGRPSN LSGWALLLSI FVAEHVYLVV QLAVRYVVEK LDSPGLQKER AERFALRKRL 660
  661 LDDTLGHDEA EKAATAVLSG SEKITRDSLE EEARIASTKG HGSPEESFWL RQRGAGETIE 720
  721 VGRRLISEVE SAHNATKTVH ALAVDRGGCE VG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle