YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38110405, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	90	0.60
Transmembrane Helix	91	110	0.72
Cytoplasmic	111	141	0.77
Transmembrane Helix	142	163	0.81
Non-Cytoplasmic	164	171	0.68
Transmembrane Helix	172	192	0.93
Cytoplasmic	193	201	0.79
Transmembrane Helix	202	223	0.92
Non-Cytoplasmic	224	230	0.78
Transmembrane Helix	231	251	0.94
Cytoplasmic	252	271	0.91
Transmembrane Helix	272	292	0.92
Non-Cytoplasmic	293	299	0.84
Transmembrane Helix	300	322	0.92
Cytoplasmic	323	338	0.95
Transmembrane Helix	339	362	0.92
Non-Cytoplasmic	363	376	0.85
Transmembrane Helix	377	396	0.94
Cytoplasmic	397	404	0.70
Transmembrane Helix	405	425	0.88
Non-Cytoplasmic	426	433	0.81
Transmembrane Helix	434	459	0.80
Cytoplasmic	460	467	0.77
Transmembrane Helix	468	490	0.76
Non-Cytoplasmic	491	535	0.88
Transmembrane Helix	536	558	0.88
Cytoplasmic	559	811	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNYSPRSPSL RSEKETRPGG RASTDDDIEA AQPAIHDAVV GAGTDSGRAD EAHSAPLARE  60
   61 KHAGAPAEAK GHSSSDTAAV SPGGMYNPRS LRFWAIMGCN FLALFLVALD RTILATAVPR 120
  121 ITDEFHSLGD VGWIYKFYPT KWTFLVSIVV FEIGSAICGA APTSTVFIVG RSIAGLASAG 180
  181 IFTGCMLMFM MVPLHKRPMF QGLFGMTFGL ASVMGPLVGG AFTGTVTWRW CFYMNLPIGL 240
  241 VAFICMILWW TPPEKPTEPA PLLTHIKRLD PLGSFFFLPA VVSLLLALEW GGSTYPWNSG 300
  301 VIIGLLVACA VLVSAFAAVQ ILRPETATIP ARVITQRSVL FATIFTFFVA GGMLMCVYFL 360
  361 PIWFQTAQGV DPLRSGIYTL PLVLSLVVSS AMSGIFTSKI GYYMPSMLLC PVIMAVGEGL 420
  421 MSTFSPTTDS GHWIGFQFLT GFGLGFGMQT GGLAIQTVLP MADVSTGIAI NMFAQQLGGA 480
  481 VFTSVGQAIL SNVLVKQLVG VDGLQAEEII KGGITNLLSH VRREDRGLVV GAYNFACTRI 540
  541 FLAAMALSCC ALLCAFCMEW RSIKKPQPEN GVPQGATGDT APALLVKEGA MPGINSCPDA 600
  601 NQDATSNKEF GENPLLTDTR SDLGPRDVDS STESEANIAD KPVNRHSLGH NETSVIAKHT 660
  661 NGLVIGIVPY ADTPTDEPTE DKLFSEDTQS DLTPTTLAEA EAEIEASAKA EKETMAEKEI 720
  721 EPEKEAVADA RAEAEAEAGA NTEGRADGSD GDSFVTVSED TKLDGQAKDQ GEMLPRGSLD 780
  781 LLFLLTPGVQ RSSRGDTKPE ESERSQAQKQ P