YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39977031, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	22	0.99
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	186	0.99
Transmembrane Helix	187	206	0.97
Cytoplasmic	207	215	0.88
Transmembrane Helix	216	238	0.90
Non-Cytoplasmic	239	261	0.82
Transmembrane Helix	262	282	0.88
Cytoplasmic	283	290	0.89
Transmembrane Helix	291	314	0.88
Non-Cytoplasmic	315	321	0.81
Transmembrane Helix	322	342	0.93
Cytoplasmic	343	366	0.86
Transmembrane Helix	367	387	0.94
Non-Cytoplasmic	388	407	0.89
Transmembrane Helix	408	428	0.91
Cytoplasmic	429	545	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLHFFTELL AAGSLLLSSV NALEAKLTQQ EDKREKCVGM YSRSAWGGDI DPFILVRFNK  60
   61 VEEEGDHRAS MLIFEWMDQD LVLFQSSPDT PKKLAICNPE NVSAGNCNET HLGEYIVSAN 120
  121 VNKESHNIVH TQVVDLKDPK PFNYPIKNTG YYCIFTAEYT RSDYEAIVEF RNAFGELPAA 180
  181 QIPKLPFYGG ITILYALVAV FWGLLYYRHR SDILPVQNYI TAILIFLVVE MLLTWAFYDY 240
  241 LNRHGSNTLS KFLLVLVAVL NAIRNSFSFF LLLIVCMGYG VVKHTLGKTM IYVRYLAIAH 300
  301 FFFGLVYAVA SLVITPDSAG PFVLLIVLPL AGTLTAFYVW TLNSLNLTLK ELNERKQHVK 360
  361 EGMYKKLWWC ILISIIVIFG FFFFSSFSFT SMRDPDYVPF HWKTRWFMLD GWLNLVYFAD 420
  421 VAFIAYVWRP TANNRRFAMS DEIAQEDDGT FDMTNMDIGA PDDSDDEEAN IGTKPATSTH 480
  481 TATQTNGGAP SNARSGPTAT RNAGPAARDS LDGETIFAVG EDLDKFSDDD EDSEEERGLV 540
  541 KKSNK