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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|12240281
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.79
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQAQEVLRQL RFPELEDFRH YMRGLPTNAL MGMGAFAAFT TYWLATRPKA LKPPCDLGMQ  60
   61 SVEMPGDELA RRSVLNDSDE HVAYYYSDAR TIYEVFQRGL RVSDNGPCLG SRKPNQPYEW 120
  121 QSYKQVVERA EHIGSALLHR GHSNTGDKFV GIFSQNRPEW TISELACYTY SMVAVPLYDT 180
  181 LGTEAIGYII EKADISTVIC DIPEKAGMIM DCIKEKGRTV KTIVLIEPFD SELVTRGQDC 240
  241 GIEVLSLREF EALGKANLQK PMPPNPEDLA LICFTSGTTG NPKGAMLTHG NVISNTAAFI 300
  301 RITETILKPS TEDCLISFLP LAHMFERVVE GVVLIHGARI GYFQGDIRLL MDDLKTLQPT 360
  361 VFPVVPRLLN RMFDKIFSQA NTPLKRWLLD FAFSRKEAEM KTGVVRKDSI WDKIIFKKVQ 420
  421 ESLGGHVRLI ITGAGPVAPT ILTFLRAALG CQFYEGYGQT ECTAGCSMSM PGDWTAGHVG 480
  481 PPLPCNAIKL VDVAEMNYMA ANGEGEVCVK GPNVFLGYLK DSERTAEAID EDGWLHTGDV 540
  541 GKWLPNGCLK ITDRKKHIFK LAQGEYIAPE KIETVYNLSD PVAQIFVYGE SLQACLVAIV 600
  601 VPDPDFLPIW MKKRGIEGSY SELCSNKDVK SAILEDILRL GKEAGLKSFE QVKDIALHTE 660
  661 LFSIQNGLLT PTLKAKRTEI RNRFKENIDE LYAKINM

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle