YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PD2R2_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANITLKPLC PLLEEMVQLP NHSNSSLRYI DHVSVLLHGL ASLLGLVENG LILFVVGCRM  60
   61 RQTVVTTWVL HLALSDLLAA ASLPFFTYFL AVGHSWELGT TFCKLHSSVF FLNMFASGFL 120
  121 LSAISLDRCL QVVRPVWAQN HRTVAAAHRV CLMLWALAVL NTVPYFVFRD TIPRRDGRIM 180
  181 CYYNMLLLNP GSDRDTTCDY RQKALAVSKF LLAFMVPLAI IASSHVAVSL QLHHRGRQRT 240
  241 GRFVRLVAAI VVAFILCWGP YHIFSLLEAR AHSVTTLRQL ASRGLPFVTS LAFFNSVVNP 300
  301 LLYVLTCPDM LHKLRRSLLT VLESVLVEDS DLSTGPGKRC RRRHRRRASS TTTPASTLLL 360
  361 ADRFPQLRPA RLIGWMRRGS AELPRRVREQ SQEKQGSLSC TLD

Type	Start	End	Confidence
Non-Cytoplasmic	1	34	0.89
Transmembrane Helix	35	57	0.86
Cytoplasmic	58	67	0.81
Transmembrane Helix	68	90	0.90
Non-Cytoplasmic	91	106	0.81
Transmembrane Helix	107	126	0.91
Cytoplasmic	127	144	0.84
Transmembrane Helix	145	168	0.85
Non-Cytoplasmic	169	209	0.94
Transmembrane Helix	210	232	0.87
Cytoplasmic	233	242	0.87
Transmembrane Helix	243	264	0.94
Non-Cytoplasmic	265	284	0.92
Transmembrane Helix	285	307	0.84
Cytoplasmic	308	403	0.86