YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38260690
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.58
Transmembrane Helix	5	23	0.55
Cytoplasmic	24	48	0.93
Transmembrane Helix	49	71	0.92
Non-Cytoplasmic	72	82	0.80
Transmembrane Helix	83	103	0.92
Cytoplasmic	104	113	0.83
Transmembrane Helix	114	133	0.94
Non-Cytoplasmic	134	141	0.88
Transmembrane Helix	142	164	0.85
Cytoplasmic	165	273	0.94
Transmembrane Helix	274	294	0.90
Non-Cytoplasmic	295	312	0.86
Transmembrane Helix	313	337	0.75
Cytoplasmic	338	346	0.78
Transmembrane Helix	347	365	0.81
Non-Cytoplasmic	366	368	0.56
Transmembrane Helix	369	388	0.80
Cytoplasmic	389	407	0.75
Transmembrane Helix	408	425	0.88
Non-Cytoplasmic	426	438	0.74
Transmembrane Helix	439	458	0.96
Cytoplasmic	459	478	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQLYAVQFHL FVTCVLFLSR EGFRRACLRA NIKRDGPGSE ENVTRLLKVA WMTVPLGIAI  60
   61 TIAACIFVLW WQNLSYSDTY AQAILIHGFA CLLELMAEPL YILSQTLVKL ELRLFVEIAA 120
  121 TFARCLTLWS LIVNQTNMEK GIVFALSQVA YGGSLFLGYW AYFLISGALR SSDLFPFRPG 180
  181 NFMDFDNKLS NMCMLFTFQS FRKLILQEGE KLVLVWLDTP YNQAVYGIVD KLGNLVVRMV 240
  241 FFPFEETSYT IFARFASGDY QERKKKLGIG LTEALKLVIL IGLIFMAFGP SYSYSLIRLL 300
  301 YGEKWSDGEA SLALQFYCLY IIVLAMNGTS EAFLHAVGTE NELKRSNDML LVFSLIYVTL 360
  361 NILLIRSAGA IGLIMANSLN MIFRIIYSGK FIQRYFQGTS SFSFRKCFPL GWQILILSSI 420
  421 ITLISEKTIL DRKNFWETFP LHFAIGFICF CLSAIVIYRR ERVFIKRIIR FRDYNHDD