YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|39579520, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.60
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASAVQPYFF NKNAEYMRMD TVGTVEERSG NNISKYCCIF LTMSVCLGIY GFFNFQNEYT  60
   61 IYVNGKIVNF TGVEDFIPPF VSYDPHILVA PENKLISCAI AKSMSQLTAS IMCLLYDEDT 120
  121 FLAQNLSLND AWNTSRECLE EYAFQHPSPQ LLNDPDTVRF AFIRDPIQRF VSFYLDKCGH 180
  181 LGQCLGCNST DLRCFVRKTY EMLKNISDHR HGFDWDGNVT AEHAAPLSWM CNFDKDLEKW 240
  241 HLLMMGSDLE ERKSSILHLG NILKRQGFNE TLVEKIQKDM TIGETPHGTH KSSHRQEAER 300
  301 QIREDPYIRD LLHKIYFFDY VVFPFKRDVL DEKYKTNFWK TPEV

Type	Start	End	Confidence
Cytoplasmic	1	32	0.59
Transmembrane Helix	33	53	0.54
Non-Cytoplasmic	54	344	0.99